RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 ACSF2Q96CM8 615 aaPredicted RBP10.26□□□□□ -0.77
YBX3-210ENST00000540975 TMEM87BQ96K49 555 aa10.26□□□□□ -0.77
YBX3-210ENST00000540975 PODXL2Q9NZ53 605 aa10.26□□□□□ -0.77
YBX3-210ENST00000540975 ADAMTS4O75173 837 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 TMEM201Q5SNT2 666 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 USP48Q86UV5 1035 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 FAM181AQ8N9Y4 354 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 RIN3Q8TB24 985 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 U3KQE9 123 aa10.25□□□□□ -0.77
YBX3-210ENST00000540975 IGF2BP3O00425 579 aaKnown RBP eCLIP10.24□□□□□ -0.77
YBX3-210ENST00000540975 GRIN3BO60391 1043 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 OXCT1P55809 520 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 ZNF394Q53GI3 561 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 XAGE3Q8WTP9 111 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 LRRC3Q9BY71 257 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 MKNK2Q9HBH9 465 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 BSDC1Q9NW68 430 aaPredicted RBP10.24□□□□□ -0.77
YBX3-210ENST00000540975 UBP1Q9NZI7 540 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 GTF2IRD1Q9UHL9 959 aa10.24□□□□□ -0.77
YBX3-210ENST00000540975 UPK3BL1B0FP48 263 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 UPK3BL2E5RIL1 263 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 CRKP46108 304 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 CWF19L2Q2TBE0 894 aaKnown RBP10.23□□□□□ -0.77
YBX3-210ENST00000540975 NBPF11Q86T75 865 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 MIPEPQ99797 713 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 DPH2Q9BQC3 489 aaPredicted RBP10.23□□□□□ -0.77
YBX3-210ENST00000540975 SPON2Q9BUD6 331 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 NT5C1AQ9BXI3 368 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 BRMS1Q9HCU9 246 aa10.23□□□□□ -0.77
YBX3-210ENST00000540975 HTR3BO95264 441 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 WNT11O96014 354 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 PRNPP04156 253 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 RACK1P63244 317 aaKnown RBP10.22□□□□□ -0.77
YBX3-210ENST00000540975 LETMD1Q6P1Q0 360 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 METTL16Q86W50 562 aaKnown RBP10.22□□□□□ -0.77
YBX3-210ENST00000540975 NETO1Q8TDF5 533 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 EAF1Q96JC9 268 aaPredicted RBP10.22□□□□□ -0.77
YBX3-210ENST00000540975 REV1Q9UBZ9 1251 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 DDX41Q9UJV9 622 aaKnown RBP10.22□□□□□ -0.77
YBX3-210ENST00000540975 CNTNAP4Q9C0A0 1308 aa10.22□□□□□ -0.77
YBX3-210ENST00000540975 XP32Q5T750 250 aa10.21□□□□□ -0.77
YBX3-210ENST00000540975 ARHGAP27Q6ZUM4 889 aa10.21□□□□□ -0.77
YBX3-210ENST00000540975 PLD6Q8N2A8 252 aaKnown RBP10.21□□□□□ -0.77
YBX3-210ENST00000540975 CCDC39Q9UFE4 941 aa10.21□□□□□ -0.77
YBX3-210ENST00000540975 PLAGL2Q9UPG8 496 aa10.21□□□□□ -0.77
YBX3-210ENST00000540975 PCDHGB7Q9Y5F8 929 aa10.21□□□□□ -0.77
YBX3-210ENST00000540975 APOBRQ0VD83 1088 aa10.2□□□□□ -0.78
YBX3-210ENST00000540975 SEZ6Q53EL9 994 aa10.2□□□□□ -0.78
YBX3-210ENST00000540975 CDH24Q86UP0 819 aa10.2□□□□□ -0.78
YBX3-210ENST00000540975 KIAA0825Q8IV33 1275 aa10.2□□□□□ -0.78
YBX3-210ENST00000540975 ZNF428Q96B54 188 aa10.2□□□□□ -0.78
YBX3-210ENST00000540975 PRDM5Q9NQX1 630 aaPredicted RBP10.2□□□□□ -0.78
YBX3-210ENST00000540975 ATE1O95260 518 aa10.19□□□□□ -0.78
YBX3-210ENST00000540975 HDLBPQ00341 1268 aaKnown RBP10.19□□□□□ -0.78
YBX3-210ENST00000540975 FAM13CQ8NE31 585 aa10.19□□□□□ -0.78
YBX3-210ENST00000540975 TPX2Q9ULW0 747 aaKnown RBP10.19□□□□□ -0.78
YBX3-210ENST00000540975 MAPK8IP1Q9UQF2 711 aa10.19□□□□□ -0.78
YBX3-210ENST00000540975 PCDHB14Q9Y5E9 798 aa10.19□□□□□ -0.78
YBX3-210ENST00000540975 CHURC1-FNTBB4DL54 471 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 CEACAM5P06731 702 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 YARSP54577 528 aaKnown RBP10.18□□□□□ -0.78
YBX3-210ENST00000540975 C9orf131Q5VYM1 1079 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 SLITRK4Q8IW52 837 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 NKD1Q969G9 470 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 EHMT1Q9H9B1 1298 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 CEP131Q9UPN4 1083 aa10.18□□□□□ -0.78
YBX3-210ENST00000540975 IFI16Q16666 785 aaKnown RBP10.17□□□□□ -0.78
YBX3-210ENST00000540975 SLFN12Q8IYM2 578 aa10.17□□□□□ -0.78
YBX3-210ENST00000540975 ZNF654Q8IZM8 581 aa10.17□□□□□ -0.78
YBX3-210ENST00000540975 REXO1Q8N1G1 1221 aaKnown RBP10.17□□□□□ -0.78
YBX3-210ENST00000540975 TMEM265A0A087WTH1 108 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 DNAJA2O60884 412 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 ITIH2P19823 946 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 MCM4P33991 863 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 SFRP5Q5T4F7 317 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 ZNF746Q6NUN9 644 aaPredicted RBP10.16□□□□□ -0.78
YBX3-210ENST00000540975 NFXL1Q6ZNB6 911 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 VSIG10LQ86VR7 867 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 NT5DC4Q86YG4 428 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 PPP1R13LQ8WUF5 828 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 BCL7CQ8WUZ0 217 aaPredicted RBP10.16□□□□□ -0.78
YBX3-210ENST00000540975 TNKS2Q9H2K2 1166 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 KLHL3Q9UH77 587 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 VAV3Q9UKW4 847 aa10.16□□□□□ -0.78
YBX3-210ENST00000540975 ANGEL1Q9UNK9 670 aaKnown RBP10.16□□□□□ -0.78
YBX3-210ENST00000540975 SLC22A31A6NKX4 558 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 GNAT3A8MTJ3 354 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 PRR33A8MZF0 331 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 RBAK-RBAKDNI3L0D1 243 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 CYP7A1P22680 504 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 ZNF165P49910 485 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 GP2P55259 537 aaKnown RBP10.15□□□□□ -0.78
YBX3-210ENST00000540975 CLCQ05315 142 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 BNIP3Q12983 259 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 MLECQ14165 292 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 NKPD1Q17RQ9 610 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 DNAJB8Q8NHS0 232 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 CYB5D2Q8WUJ1 264 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 MISP3Q96FF7 219 aa10.15□□□□□ -0.78
YBX3-210ENST00000540975 SLC5A6Q9Y289 635 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms