RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 DIS3L2Q8IYB7 885 aaKnown RBP16.02■□□□□ 0.16
COLCA1-204ENST00000540738 SLC16A10Q8TF71 515 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 KANSL2Q9H9L4 492 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 CYP19A1P11511 503 aaPredicted RBP16.02■□□□□ 0.16
COLCA1-204ENST00000540738 PNMA1Q8ND90 353 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 PRAMEF22A3QJZ6 481 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 ZNF654Q8IZM8 581 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 SDR42E1Q8WUS8 393 aa16.02■□□□□ 0.16
COLCA1-204ENST00000540738 LAMC1P11047 1609 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 TTC38Q5R3I4 469 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 AXDND1Q5T1B0 1012 aaPredicted RBP16.02■□□□□ 0.15
COLCA1-204ENST00000540738 PI4KBQ9UBF8 816 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 DNM3Q9UQ16 869 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 PSDA5PKW4 1024 aaPredicted RBP16.02■□□□□ 0.15
COLCA1-204ENST00000540738 EZRP15311 586 aaKnown RBP16.02■□□□□ 0.15
COLCA1-204ENST00000540738 TXKP42681 527 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 NT5C2P49902 561 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 ISM2Q6H9L7 571 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 ADD3Q9UEY8 706 aaKnown RBP16.02■□□□□ 0.15
COLCA1-204ENST00000540738 LRWD1Q9UFC0 647 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 SERPINB13Q9UIV8 391 aa16.02■□□□□ 0.15
COLCA1-204ENST00000540738 CEP152O94986 1710 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 E7EWF7 191 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 WDR44Q5JSH3 913 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 LUZP1Q86V48 1076 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 TMCO5BA8MYB1 307 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 CCDC125Q86Z20 511 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 R3HDM1Q15032 1099 aaKnown RBP16.01■□□□□ 0.15
COLCA1-204ENST00000540738 MAP7D2Q96T17 732 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 CCPG1Q9ULG6 757 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 TMEM232C9JQI7 657 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 PRPHP41219 470 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 KRT26Q7Z3Y9 468 aa16.01■□□□□ 0.15
COLCA1-204ENST00000540738 FOXP4Q8IVH2 680 aaPredicted RBP16.01■□□□□ 0.15
COLCA1-204ENST00000540738 GSTTP1A0A1W2PQM5 241 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 PABPN1LA6NDY0 278 aaKnown RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 GAS7O60861 476 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 DDAH1O94760 285 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 BIRC3Q13489 604 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 EHBP1Q8NDI1 1231 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 SNX14Q9Y5W7 946 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 RIMS1Q86UR5 1692 aaKnown RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 TESPA1A2RU30 521 aaPredicted RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 GOLGA6L9A6NEM1 432 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 DDX39AO00148 427 aaKnown RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 FOSP01100 380 aaPredicted RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 HARSP12081 509 aaKnown RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 CALCRLQ16602 461 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 ZNF354CQ86Y25 554 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 PRKAG2Q9UGJ0 569 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 GALNT17Q6IS24 598 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 TTLL11Q8NHH1 800 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 PSTPIP2Q9H939 334 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 SMCO2A6NFE2 343 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 ZEB2O60315 1214 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 EPB41P11171 864 aaKnown RBP16■□□□□ 0.15
COLCA1-204ENST00000540738 KIF4BQ2VIQ3 1234 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 AP5M1Q9H0R1 490 aa16■□□□□ 0.15
COLCA1-204ENST00000540738 KCNQ2O43526 872 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 ZNF853P0CG23 659 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 RFX1P22670 979 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 SPOUT1Q5T280 376 aaKnown RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 LRRC47Q8N1G4 583 aaKnown RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 CNPY2Q9Y2B0 182 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 CEP170BQ9Y4F5 1589 aaPredicted RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 SPATA31A5Q5VU36 1347 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 SPATA31A7Q8IWB4 1347 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 CYLC1P35663 651 aaPredicted RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 TMC6Q7Z403 805 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 SYNE4Q8N205 404 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 FNBP4Q8N3X1 1017 aaPredicted RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 SNX29Q8TEQ0 813 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 TM6SF1Q9BZW5 370 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 H7C1W4 665 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 DNM1Q05193 864 aaKnown RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 CNNM4Q6P4Q7 775 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 APOBEC3FQ8IUX4 373 aaKnown RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 TRPC3Q13507 836 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 MIER3Q7Z3K6 550 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 TTC16Q8NEE8 873 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 KLRF2D3W0D1 207 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 NR1I2O75469 434 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 ADORA1P30542 326 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 ASPRV1Q53RT3 343 aa15.99■□□□□ 0.15
COLCA1-204ENST00000540738 ZC3H13Q5T200 1668 aaKnown RBP15.99■□□□□ 0.15
COLCA1-204ENST00000540738 TNKSO95271 1327 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 KDM2BQ8NHM5 1336 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 TTLL1O95922 423 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 SNX16P57768 344 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 NAA15Q9BXJ9 866 aaKnown RBP15.98■□□□□ 0.15
COLCA1-204ENST00000540738 NT5C3AQ9H0P0 336 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 TRPC6Q9Y210 931 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 EIF3JO75822 258 aaKnown RBP15.98■□□□□ 0.15
COLCA1-204ENST00000540738 TNNT1P13805 278 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 DPH6Q7L8W6 267 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 GBP3Q9H0R5 595 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 ELP1O95163 1332 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 TRPM1Q7Z4N2 1603 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 AMNQ9BXJ7 453 aa15.98■□□□□ 0.15
COLCA1-204ENST00000540738 CDHR2Q9BYE9 1310 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms