RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 GNRH1P01148 92 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 SH3D19Q5HYK7 790 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 ANKRD45Q5TZF3 282 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 TSHZ3Q63HK5 1081 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 CCDC84Q86UT8 332 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-238ENST00000540663 AMOTL1Q8IY63 956 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 PI4K2BQ8TCG2 481 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 PNMA3Q9UL41 463 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 LOC285556D6RIA3 1793 aa14.23□□□□□ -0.13
SYNE1-238ENST00000540663 SALL3Q9BXA9 1300 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 C19orf81C9J6K1 198 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 RNF113AO15541 343 aaKnown RBP14.22□□□□□ -0.13
SYNE1-238ENST00000540663 GDF11O95390 407 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 PLCD1P51178 756 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 LACTBP83111 547 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-238ENST00000540663 GABPAQ06546 454 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 SLC4A8Q2Y0W8 1093 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 CERKLQ49MI3 558 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-238ENST00000540663 SDR42E1Q8WUS8 393 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 APPBP2Q92624 585 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 STAP2Q9UGK3 403 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 SWAP70Q9UH65 585 aa14.22□□□□□ -0.13
SYNE1-238ENST00000540663 GH2P01242 217 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 BCRP11274 1271 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 SHMT1P34896 483 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 HMGCS2P54868 508 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 PRMT2P55345 433 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 BACE1P56817 501 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 JAG1P78504 1218 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 ABCB5Q2M3G0 1257 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 SLFNL1Q499Z3 407 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 GIMAP6Q6P9H5 292 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 SMC5Q8IY18 1101 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 EXOC6Q8TAG9 804 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 OTUD7AQ8TE49 926 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-238ENST00000540663 PUS7LQ9H0K6 701 aaKnown RBP14.21□□□□□ -0.13
SYNE1-238ENST00000540663 CABP5Q9NP86 173 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 TMOD4Q9NZQ9 345 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 CPA4Q9UI42 421 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 PTPN22Q9Y2R2 807 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 SUPT16HQ9Y5B9 1047 aaKnown RBP14.21□□□□□ -0.13
SYNE1-238ENST00000540663 SLC4A4Q9Y6R1 1079 aa14.21□□□□□ -0.13
SYNE1-238ENST00000540663 USP17L10C9JJH3 530 aa14.2□□□□□ -0.14
SYNE1-238ENST00000540663 PRKAB2O43741 272 aa14.2□□□□□ -0.14
SYNE1-238ENST00000540663 CYP2C8P10632 490 aa14.2□□□□□ -0.14
SYNE1-238ENST00000540663 MTMR2Q13614 643 aa14.2□□□□□ -0.14
SYNE1-238ENST00000540663 TICAM2Q86XR7 235 aa14.2□□□□□ -0.14
SYNE1-238ENST00000540663 SMCR8Q8TEV9 937 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-238ENST00000540663 STRBPQ96SI9 672 aaKnown RBP14.2□□□□□ -0.14
SYNE1-238ENST00000540663 CHGBP05060 677 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 GNAT2P19087 354 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 OSBPP22059 807 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 GCLCP48506 637 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-238ENST00000540663 RGS19P49795 217 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 TREML2Q5T2D2 321 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 C12orf60Q5U649 245 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 OSBP2Q969R2 916 aa14.19□□□□□ -0.14
SYNE1-238ENST00000540663 ARPP21Q9UBL0 812 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-238ENST00000540663 USP17L12C9JPN9 530 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 USP17L21D6R901 530 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 CYP2D6P10635 497 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 HOXD10P28358 340 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 HOXA7P31268 230 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-238ENST00000540663 PSMC4P43686 418 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 USP14P54578 494 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 PDE1AP54750 535 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 CAP1Q01518 475 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 RAB3GAP1Q15042 981 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 SHROOM1Q2M3G4 852 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-238ENST00000540663 USP17L2Q6R6M4 530 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 CCDC17Q96LX7 622 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 FSD1Q9BTV5 496 aa14.18□□□□□ -0.14
SYNE1-238ENST00000540663 GPAA1O43292 621 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 FCGRTP55899 365 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 IRX3P78415 501 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-238ENST00000540663 SBK1Q52WX2 424 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 TMEM179Q6ZVK1 233 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 C16orf86Q6ZW13 317 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 ARMC5Q96C12 935 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 EVI5LQ96CN4 794 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 TRIM47Q96LD4 638 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 C12orf42Q96LP6 360 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 FEZ1Q99689 392 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 ARHGAP39Q9C0H5 1083 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 KIAA1683Q9H0B3 1180 aa14.17□□□□□ -0.14
SYNE1-238ENST00000540663 ASCC2Q9H1I8 757 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-238ENST00000540663 BAZ2AQ9UIF9 1905 aaKnown RBP14.16□□□□□ -0.14
SYNE1-238ENST00000540663 GSG1L2A8MUP6 293 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 FMNL1O95466 1100 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-238ENST00000540663 NUCB1Q02818 461 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 FAM110CQ1W6H9 321 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 ZMYM1Q5SVZ6 1142 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 CTR9Q6PD62 1173 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 NBPF11Q86T75 865 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 CHD1LQ86WJ1 897 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 GTF3C2Q8WUA4 911 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-238ENST00000540663 LNPKQ9C0E8 428 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 SRRDQ9UH36 339 aa14.16□□□□□ -0.14
SYNE1-238ENST00000540663 ROBO3Q96MS0 1386 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 MPHOSPH10O00566 681 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms