RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 TPX2Q9ULW0 747 aaKnown RBP6.61□□□□□ -1.35
VPS13A-213ENST00000539950 TLR6Q9Y2C9 796 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.61□□□□□ -1.35
VPS13A-213ENST00000539950 CLCN7P51798 805 aa6.6□□□□□ -1.35
VPS13A-213ENST00000539950 ZP2Q05996 745 aa6.6□□□□□ -1.35
VPS13A-213ENST00000539950 PSMD2Q13200 908 aa6.6□□□□□ -1.35
VPS13A-213ENST00000539950 LETMD1Q6P1Q0 360 aa6.6□□□□□ -1.35
VPS13A-213ENST00000539950 CST3P01034 146 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-213ENST00000539950 ZNF865P0CJ78 1059 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-213ENST00000539950 TAGLNQ01995 201 aaKnown RBP6.59□□□□□ -1.35
VPS13A-213ENST00000539950 TAF1CQ15572 869 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-213ENST00000539950 SFRP5Q5T4F7 317 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 FBXO33Q7Z6M2 555 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 POU5F2Q8N7G0 328 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 HSPA12BQ96MM6 686 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 DPH2Q9BQC3 489 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-213ENST00000539950 MIR1-1HGQ9H1L0 117 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 TJP2Q9UDY2 1190 aa6.59□□□□□ -1.35
VPS13A-213ENST00000539950 FAM155AB1AL88 458 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-213ENST00000539950 F6X3S4 739 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 PGRP06401 933 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 CDKAL1Q5VV42 579 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 C22orf34Q6ZV56 151 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 TMC4Q7Z404 712 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 MFSD4AQ8N468 514 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 FAM168AQ92567 244 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 JARID2Q92833 1246 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-213ENST00000539950 ATP13A1Q9HD20 1204 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 SEMA3GQ9NS98 782 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 CAPN6Q9Y6Q1 641 aa6.58□□□□□ -1.36
VPS13A-213ENST00000539950 USP31Q70CQ4 1352 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 CBX7O95931 251 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 ST13P50502 369 aaKnown RBP6.57□□□□□ -1.36
VPS13A-213ENST00000539950 TSNAXIP1Q2TAA8 658 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 PHC3Q8NDX5 983 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 FLAD1Q8NFF5 587 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 NOC4LQ9BVI4 516 aaKnown RBP6.57□□□□□ -1.36
VPS13A-213ENST00000539950 ST14Q9Y5Y6 855 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 TACC3Q9Y6A5 838 aa6.57□□□□□ -1.36
VPS13A-213ENST00000539950 BTBD11A6QL63 1104 aa6.56□□□□□ -1.36
VPS13A-213ENST00000539950 C8AP07357 584 aa6.56□□□□□ -1.36
VPS13A-213ENST00000539950 XPCQ01831 940 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-213ENST00000539950 RPL6Q02878 288 aaKnown RBP6.56□□□□□ -1.36
VPS13A-213ENST00000539950 CDH24Q86UP0 819 aa6.56□□□□□ -1.36
VPS13A-213ENST00000539950 MRPL41Q8IXM3 137 aaKnown RBP6.56□□□□□ -1.36
VPS13A-213ENST00000539950 TMEM87BQ96K49 555 aa6.56□□□□□ -1.36
VPS13A-213ENST00000539950 CARS2Q9HA77 564 aaKnown RBP6.56□□□□□ -1.36
VPS13A-213ENST00000539950 H3BS24 57 aa6.55□□□□□ -1.36
VPS13A-213ENST00000539950 RLBP1P12271 317 aa6.55□□□□□ -1.36
VPS13A-213ENST00000539950 ZNF648Q5T619 568 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-213ENST00000539950 ZNF746Q6NUN9 644 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-213ENST00000539950 ACSF2Q96CM8 615 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-213ENST00000539950 CTNND2Q9UQB3 1225 aa6.55□□□□□ -1.36
VPS13A-213ENST00000539950 CORINQ9Y5Q5 1042 aa6.55□□□□□ -1.36
VPS13A-213ENST00000539950 TNK2Q07912 1038 aa6.54□□□□□ -1.36
VPS13A-213ENST00000539950 SLC6A19Q695T7 634 aa6.54□□□□□ -1.36
VPS13A-213ENST00000539950 BNC2Q6ZN30 1099 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-213ENST00000539950 MCATQ8IVS2 390 aaKnown RBP6.54□□□□□ -1.36
VPS13A-213ENST00000539950 CRELD1Q96HD1 420 aa6.54□□□□□ -1.36
VPS13A-213ENST00000539950 LMCD1Q9NZU5 365 aa6.54□□□□□ -1.36
VPS13A-213ENST00000539950 PDE4BQ07343 736 aa6.53□□□□□ -1.36
VPS13A-213ENST00000539950 CAMK2GQ13555 558 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-213ENST00000539950 DNAJB8Q8NHS0 232 aa6.53□□□□□ -1.36
VPS13A-213ENST00000539950 TMEM40Q8WWA1 233 aa6.53□□□□□ -1.36
VPS13A-213ENST00000539950 UBE2FQ969M7 185 aa6.53□□□□□ -1.36
VPS13A-213ENST00000539950 C19orf73Q9NVV2 129 aa6.53□□□□□ -1.36
VPS13A-213ENST00000539950 FAM221AA4D161 298 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 SORBS3O60504 671 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 CILPO75339 1184 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 F13A1P00488 732 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 PF4P02776 101 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 LMNB2Q03252 620 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 FYB2Q5VWT5 728 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 THAP5Q7Z6K1 395 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 CCDC84Q86UT8 332 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-213ENST00000539950 ZSWIM9Q86XI8 627 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 RHOVQ96L33 236 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 ZSWIM5Q9P217 1185 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 VTI1BQ9UEU0 232 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 ADAM30Q9UKF2 790 aa6.52□□□□□ -1.37
VPS13A-213ENST00000539950 ZNF503-AS2A6NEH8 195 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 UPK3BL1B0FP48 263 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 UPK3BL2E5RIL1 263 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 CYP7A1P22680 504 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 KIR3DL1P43629 444 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 PPP1R13LQ8WUF5 828 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 GATAD2BQ8WXI9 593 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 COX4I2Q96KJ9 171 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 Q96M66 194 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 KRTAP4-7Q9BYR0 210 aa6.51□□□□□ -1.37
VPS13A-213ENST00000539950 GZF1Q9H116 711 aaPredicted RBP6.51□□□□□ -1.37
VPS13A-213ENST00000539950 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13A-213ENST00000539950 WASH4PA8MWX3 477 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 PLCG1P19174 1290 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 ETV3P41162 512 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 JAG1P78504 1218 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 KCNMB1Q16558 191 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 CCDC27Q2M243 656 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 TMEM74Q96NL1 305 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 MRS2Q9HD23 443 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms