RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 MIGA1Q8NAN2 632 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 DPF3Q92784 378 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 P2RX7Q99572 595 aaKnown RBP10.33□□□□□ -0.76
USP28-203ENST00000537490 GJD2Q9UKL4 321 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 TAOK2Q9UL54 1235 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 HOXA7P31268 230 aaPredicted RBP10.32□□□□□ -0.76
USP28-203ENST00000537490 AACSQ86V21 672 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 DEFB118Q96PH6 123 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 TRIM34Q9BYJ4 488 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 IL1RAPL2Q9NP60 686 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 TMOD4Q9NZQ9 345 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 MORF4L1Q9UBU8 362 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 ZBTB21Q9ULJ3 1066 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 PTPRFP10586 1907 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 ZBED9Q6R2W3 1325 aa10.32□□□□□ -0.76
USP28-203ENST00000537490 C19orf81C9J6K1 198 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 USP17L10C9JJH3 530 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 FARP2O94887 1054 aaPredicted RBP10.31□□□□□ -0.76
USP28-203ENST00000537490 TFRCP02786 760 aaKnown RBP10.31□□□□□ -0.76
USP28-203ENST00000537490 HLA-DOAP06340 250 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 USP5P45974 858 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 FXR1P51114 621 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP28-203ENST00000537490 IRX3P78415 501 aaPredicted RBP10.31□□□□□ -0.76
USP28-203ENST00000537490 ERC1Q8IUD2 1116 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 RHPN1Q8TCX5 695 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 TXNRD2Q9NNW7 524 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 PAK6Q9NQU5 681 aaPredicted RBP10.31□□□□□ -0.76
USP28-203ENST00000537490 EMILIN3Q9NT22 766 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 GINM1Q9NU53 330 aa10.31□□□□□ -0.76
USP28-203ENST00000537490 SIPA1L1O43166 1804 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 GH2P01242 217 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 MAP3K12Q12852 859 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 TRIM32Q13049 653 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 Q3C1V9 767 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 TATDN1Q6P1N9 297 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 POTEEQ6S8J3 1075 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 CHRDL2Q6WN34 429 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 SIRT2Q8IXJ6 389 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 RIOK1Q9BRS2 568 aaKnown RBP10.3□□□□□ -0.76
USP28-203ENST00000537490 HTATIP2Q9BUP3 242 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 CRISPLD2Q9H0B8 497 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 RBPJLQ9UBG7 517 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 MGAMO43451 1857 aa10.3□□□□□ -0.76
USP28-203ENST00000537490 APBB1O00213 710 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 CYP2B6P20813 491 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 PLCD1P51178 756 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 HERVK_113P62684 666 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 HSP90AB4PQ58FF6 505 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 USP17L2Q6R6M4 530 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 CERS3Q8IU89 383 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 GPRC5AQ8NFJ5 357 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP28-203ENST00000537490 EHD4Q9H223 541 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 SERPINB13Q9UIV8 391 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 COG6Q9Y2V7 657 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 DOCK3Q8IZD9 2030 aa10.29□□□□□ -0.76
USP28-203ENST00000537490 HMGCRP04035 888 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 EVX2Q03828 476 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 ZYXQ15942 572 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 CERKLQ49MI3 558 aaPredicted RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 TTC6Q86TZ1 520 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 RPAP2Q8IXW5 612 aaPredicted RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 CLASRPQ8N2M8 674 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 ACER1Q8TDN7 264 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 DIS3LQ8TF46 1054 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 TRIB2Q92519 343 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 KIF1BPQ96EK5 621 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 EDC3Q96F86 508 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 PAWRQ96IZ0 340 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 PAGR1Q9BTK6 254 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 BCL11AQ9H165 835 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 PORCNQ9H237 461 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 ZBTB40Q9NUA8 1239 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 RBM27Q9P2N5 1060 aaKnown RBP10.28□□□□□ -0.76
USP28-203ENST00000537490 LOC285556D6RIA3 1793 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 MAST2Q6P0Q8 1798 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 RPTORQ8N122 1335 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 CENPFP49454 3210 aa10.28□□□□□ -0.76
USP28-203ENST00000537490 MYO5AQ9Y4I1 1855 aaKnown RBP10.27□□□□□ -0.76
USP28-203ENST00000537490 MKI67P46013 3256 aaKnown RBP10.27□□□□□ -0.77
USP28-203ENST00000537490 MAGEB6P1A0A0J9YX57 407 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 GOLIM4O00461 696 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 CNMDO75829 334 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 POLR3DP05423 398 aaPredicted RBP10.27□□□□□ -0.77
USP28-203ENST00000537490 MS4A1P11836 297 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 PDE6AP16499 860 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 CAPN2P17655 700 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 GUCY1A2P33402 732 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 SHMT1P34896 483 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 ERVK-9P63128 1117 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 ERVK-24P63145 666 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 GABPAQ06546 454 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 RAB3GAP1Q15042 981 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 TTF1Q15361 905 aaPredicted RBP10.27□□□□□ -0.77
USP28-203ENST00000537490 ABCB5Q2M3G0 1257 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 SLC9C2Q5TAH2 1124 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 TMED8Q6PL24 325 aaPredicted RBP10.27□□□□□ -0.77
USP28-203ENST00000537490 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.27□□□□□ -0.77
USP28-203ENST00000537490 USP6NLQ92738 828 aa10.27□□□□□ -0.77
USP28-203ENST00000537490 C12orf42Q96LP6 360 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms