RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 LGR6Q9HBX8 967 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 RPS6KA4O75676 772 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 ME1P48163 572 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 DRP2Q13474 957 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 CCDC121Q6ZUS5 278 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 NALCNQ8IZF0 1738 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 ATP10DQ9P241 1426 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 GOLGA8KD6RF30 607 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 STX10O60499 249 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 RTN2O75298 545 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 INHBEP58166 350 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 RABEP2Q9H5N1 569 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 LRRIQ3A6PVS8 624 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 MAP4K4O95819 1239 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 LMOD1P29536 600 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 CRKLP46109 303 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 ME3Q16798 604 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 SMARCC2Q8TAQ2 1214 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 KCNB2Q92953 911 aa12.26□□□□□ -0.45
CLSTN3-207ENST00000537408 CCDC181Q5TID7 509 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 C8orf58Q8NAV2 365 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 KIFC2Q96AC6 838 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 VCPKMTQ9H867 229 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 BABAM1Q9NWV8 329 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 MMP10P09238 476 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 IGHMBP2P38935 993 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 MAGEC3Q8TD91 643 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 GOLGA6BA6NDN3 693 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 MYO1BO43795 1136 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 RPSAP08865 295 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 CPA1P15085 419 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 SF3A1Q15459 793 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 CAPRIN2Q6IMN6 1127 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 DPY19L2Q6NUT2 758 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 HOOK2Q96ED9 719 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 SLIT2O94813 1529 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 FNTAP49354 379 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 FLIIQ13045 1269 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 PARP10Q53GL7 1025 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 SOGA3Q5TF21 947 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 NFXL1Q6ZNB6 911 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 MEIS3Q99687 375 aa12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 RGS17Q9UGC6 210 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-207ENST00000537408 ARHGEF28Q8N1W1 1705 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 ONECUT3O60422 494 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 SLMAPQ14BN4 828 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 YTHDF3Q7Z739 585 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 CLASRPQ8N2M8 674 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 PARD3BQ8TEW8 1205 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 CNKSR1Q969H4 720 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 ZNF496Q96IT1 587 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 ANAPC4Q9UJX5 808 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 HPCAL4Q9UM19 191 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 PRPF6O94906 941 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 SYF2O95926 243 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 E2F5Q15329 346 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 OLFM4Q6UX06 510 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 RASEFQ8IZ41 740 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 SLC40A1Q9NP59 571 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 STAP2Q9UGK3 403 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 RAB11FIP3O75154 756 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 ANXA1P04083 346 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 MRPS27Q92552 414 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 NEUROD6Q96NK8 337 aa12.24□□□□□ -0.45
CLSTN3-207ENST00000537408 BUB1BO60566 1050 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 SLC3A2P08195 630 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 NLRP12P59046 1061 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 ZNF569Q5MCW4 686 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 ATL3Q6DD88 541 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 WDR93Q6P2C0 686 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 VSTM4Q8IW00 320 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 SPDYE1Q8NFV5 336 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 PIK3R5Q8WYR1 880 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 CCDC47Q96A33 483 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 LSG1Q9H089 658 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 ZSWIM6Q9HCJ5 1215 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 BCL9LQ86UU0 1499 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 CDK12Q9NYV4 1490 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 TNS2Q63HR2 1409 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 GOLGA6L10A6NI86 522 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 ENO4A6NNW6 628 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 IKBKBO14920 756 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 SSBP05455 408 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 MTA1Q13330 715 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 KRT24Q2M2I5 525 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 BORCS6Q96GS4 357 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 OSBPL9Q96SU4 736 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 HOOK1Q9UJC3 728 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 COQ9O75208 318 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 SKAP2O75563 359 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 BRAPQ7Z569 592 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 XAGE2Q96GT9 111 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 NAPGQ99747 312 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 DDX20Q9UHI6 824 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 EME2A4GXA9 379 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 NBPF7P0C2Y1 421 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 GGCXP38435 758 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 TRIM74Q86UV6 250 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms