RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 RIOK1Q9BRS2 568 aaKnown RBP18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 SERTAD1Q9UHV2 236 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 BCL9LQ86UU0 1499 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 DOT1LQ8TEK3 1739 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 ZSCAN20P17040 1043 aaPredicted RBP18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 ETF1P62495 437 aaKnown RBP18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 SYT10Q6XYQ8 523 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 FCHSD1Q86WN1 690 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 SPATA20Q8TB22 786 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 OXER1Q8TDS5 423 aa18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 ZSCAN10Q96SZ4 725 aaPredicted RBP18.35■□□□□ 0.53
CHMP1A-202ENST00000535997 CCDC93Q567U6 631 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 CAVIN4Q5BKX8 364 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 CT47A1Q5JQC4 288 aaPredicted RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 ANKRD18AQ8IVF6 992 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 BRIP1Q9BX63 1249 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 BSDC1Q9NW68 430 aaPredicted RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 IQSEC3Q9UPP2 1182 aaPredicted RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 PRPF3O43395 683 aaKnown RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 FGRP09769 529 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 ZNF18P17022 549 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 SF3B3Q15393 1217 aaKnown RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 HOMER1Q86YM7 354 aa18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 ENAHQ8N8S7 591 aaPredicted RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 ZNF397Q8NF99 534 aaPredicted RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 DDX41Q9UJV9 622 aaKnown RBP18.34■□□□□ 0.53
CHMP1A-202ENST00000535997 PHLPP1O60346 1717 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 TRIM75PA6NK02 468 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 ACTN4O43707 911 aaKnown RBP18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 CDK11BP21127 795 aaKnown RBP18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 GYG1P46976 350 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 CATIPQ7Z7H3 387 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 IQCA1Q86XH1 822 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 CSRNP2Q9H175 543 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 RBM28Q9NW13 759 aaKnown RBP18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 AATFQ9NY61 560 aaKnown RBP eCLIP18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 NFE2L3Q9Y4A8 694 aa18.33■□□□□ 0.53
CHMP1A-202ENST00000535997 SPATA31A1Q5TZJ5 1347 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 MYH14Q7Z406 1995 aaKnown RBP18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 A0A0G2JS52 829 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 ARHGAP6O43182 974 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 BMP15O95972 392 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 CALM1P0DP23 149 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 CALM2P0DP24 149 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 CALM3P0DP25 149 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 ERCC5P28715 1186 aaPredicted RBP18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 FUT2Q10981 343 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 TBX2Q13207 712 aaPredicted RBP18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 PKN1Q16512 942 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 NUTM2AQ8IVF1 878 aaPredicted RBP18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 ACSBG1Q96GR2 724 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 PHF20Q9BVI0 1012 aa18.33■□□□□ 0.52
CHMP1A-202ENST00000535997 TMEM232C9JQI7 657 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 ZSCAN12O43309 604 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 ATP2B1P20020 1258 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 IFIT1BQ5T764 474 aaKnown RBP18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 UTP14CQ5TAP6 766 aaKnown RBP18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 INTS13Q9NVM9 706 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 PHLPP2Q6ZVD8 1323 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 RREB1Q92766 1687 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 KRT2P35908 639 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 PDILTQ8N807 584 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 MARCH10Q8NA82 808 aaPredicted RBP18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 MYH6P13533 1939 aa18.32■□□□□ 0.52
CHMP1A-202ENST00000535997 LAMB2P55268 1798 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 WNK3Q9BYP7 1800 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 PRR29P0C7W0 189 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 FMR1Q06787 632 aaKnown RBP eCLIP18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 TROAPQ12815 778 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 SPECC1LQ69YQ0 1117 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 FERMT2Q96AC1 680 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 GTPBP4Q9BZE4 634 aaKnown RBP18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 VPS54Q9P1Q0 977 aa18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 V9GY48 417 aaPredicted RBP18.31■□□□□ 0.52
CHMP1A-202ENST00000535997 STX10O60499 249 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 DMTNQ08495 405 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 KMT5BQ4FZB7 885 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 TRIM65Q6PJ69 517 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 USP49Q70CQ1 688 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 SMARCC1Q92922 1105 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 FAM84BQ96KN1 310 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 MYH2Q9UKX2 1941 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 SLFN14P0C7P3 912 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 TMEM139Q8IV31 216 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 REXO1L1PQ8IX06 675 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 SHISA4Q96DD7 197 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 BRMS1Q9HCU9 246 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 PRDM10Q9NQV6 1147 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 MINPP1Q9UNW1 487 aa18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 V9GYY5 206 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 COL16A1Q07092 1604 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-202ENST00000535997 SEMA3EO15041 775 aa18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 PLCD1P51178 756 aa18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 ELF2Q15723 593 aa18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 ERFEQ4G0M1 354 aa18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 BAG1Q99933 345 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 COL22A1Q8NFW1 1626 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-202ENST00000535997 GOLGA6L9A6NEM1 432 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms