RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 USP14P54578 494 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 CCNA1P78396 465 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 SH3D19Q5HYK7 790 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 CEP85Q6P2H3 762 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L2Q6R6M4 530 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 RPAP2Q8IXW5 612 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 TRMT44Q8IYL2 757 aaKnown RBP16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 MIGA1Q8NAN2 632 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 GPRC5AQ8NFJ5 357 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 ZNF384Q8TF68 577 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 SOCS4Q8WXH5 440 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 KIF1BPQ96EK5 621 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 SERPINB13Q9UIV8 391 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 EXOC6BQ9Y2D4 811 aa16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-205ENST00000535452 APBB1O00213 710 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 HMGCRP04035 888 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 ELNP15502 786 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 RAB3GAP1Q15042 981 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 EAF2Q96CJ1 260 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 DEFB118Q96PH6 123 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 NUDT12Q9BQG2 462 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 CRNKL1Q9BZJ0 848 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 UNC93B1Q9H1C4 597 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 HMX1Q9NP08 348 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 ZBTB21Q9ULJ3 1066 aa16.06■□□□□ 0.16
CLSTN3-205ENST00000535452 TNRC18O15417 2968 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 MAGEB6P1A0A0J9YX57 407 aa16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 EVI5O60447 810 aa16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 SLURP2P0DP57 97 aa16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 MAPK4P31152 587 aa16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 CERKLQ49MI3 558 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 PIH1D3Q9NQM4 214 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-205ENST00000535452 H0YGN5 161 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 RAB11FIP3O75154 756 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 ABCB5Q2M3G0 1257 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 WDR78Q5VTH9 848 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 NECAB2Q7Z6G3 386 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 RHPN1Q8TCX5 695 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 PANK1Q8TE04 598 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 DNAJC2Q99543 621 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 PAGR1Q9BTK6 254 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 EHD4Q9H223 541 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 IL1RAPL2Q9NP60 686 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 IVNS1ABPQ9Y6Y0 642 aa16.04■□□□□ 0.16
CLSTN3-205ENST00000535452 MPHOSPH10O00566 681 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 GH2P01242 217 aa16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 RLBP1P12271 317 aa16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 HOXA7P31268 230 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 HERVK_113P62684 666 aa16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 DYNLL1P63167 89 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 SLC9C2Q5TAH2 1124 aa16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.03■□□□□ 0.166e-7■■■■□ 21.6
CLSTN3-205ENST00000535452 TLR7Q9NYK1 1049 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 ZSWIM8A7E2V4 1837 aa16.03■□□□□ 0.16
CLSTN3-205ENST00000535452 RPTORQ8N122 1335 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L15C9J2P7 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L13C9JLJ4 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L11C9JVI0 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L18D6R9N7 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L22D6RA61 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L17D6RBQ6 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L19D6RCP7 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L20D6RJB6 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 ZKSCAN1P17029 563 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 CYP2B6P20813 491 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 RGS2P41220 211 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 USP17L24Q0WX57 530 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 ZYXQ15942 572 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 ADGRA1Q86SQ6 560 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 METTL16Q86W50 562 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 ANKLE1Q8NAG6 615 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 MORF4L1Q9UBU8 362 aa16.02■□□□□ 0.16
CLSTN3-205ENST00000535452 ZSCAN25Q6NSZ9 544 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 CHRDL2Q6WN34 429 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 SHISA4Q96DD7 197 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 GPATCH3Q96I76 525 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 P2RX7Q99572 595 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 SH2D4AQ9H788 454 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 MCM9Q9NXL9 1143 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 COLQQ9Y215 455 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 MGAMO43451 1857 aa16.01■□□□□ 0.15
CLSTN3-205ENST00000535452 GOLIM4O00461 696 aa16■□□□□ 0.15
CLSTN3-205ENST00000535452 COG6Q9Y2V7 657 aa16■□□□□ 0.15
CLSTN3-205ENST00000535452 ATAD5Q96QE3 1844 aa16■□□□□ 0.15
CLSTN3-205ENST00000535452 ERVK-9P63128 1117 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 ERVK-24P63145 666 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 TATDN1Q6P1N9 297 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 PLEKHH3Q7Z736 793 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 NBPF3Q9H094 633 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 PAK6Q9NQU5 681 aaPredicted RBP15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 SWAP70Q9UH65 585 aa15.99■□□□□ 0.15
CLSTN3-205ENST00000535452 LOC285556D6RIA3 1793 aa15.98■□□□□ 0.15
CLSTN3-205ENST00000535452 PTPRFP10586 1907 aa15.98■□□□□ 0.15
CLSTN3-205ENST00000535452 XRCC5P13010 732 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-205ENST00000535452 PDE6AP16499 860 aa15.98■□□□□ 0.15
CLSTN3-205ENST00000535452 RRP1BQ14684 758 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms