RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 SMCR8Q8TEV9 937 aaPredicted RBP20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 TGFBRAP1Q8WUH2 860 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 NAPGQ99747 312 aaPredicted RBP20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 HAUS2Q9NVX0 235 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 TTF2Q9UNY4 1162 aaKnown RBP20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 C8orf74Q6P047 294 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 PPANQ9NQ55 473 aaKnown RBP20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 PRPF6O94906 941 aaKnown RBP20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 DYMQ7RTS9 669 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 ZNF710Q8N1W2 664 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 USTQ9Y2C2 406 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 GCNT3O95395 438 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 FYB2Q5VWT5 728 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 HACE1Q8IYU2 909 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 PPP2R5DQ14738 602 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 SLC9C1Q4G0N8 1177 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 TBC1D7Q9P0N9 293 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 ZMYM3Q14202 1370 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 ERCC6LQ2NKX8 1250 aa20.21■□□□□ 0.83
SFSWAP-203ENST00000535236 VIMP08670 466 aaKnown RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 RNASE9P60153 205 aaKnown RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 MRPL44Q9H9J2 332 aaKnown RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 ITSN2Q9NZM3 1697 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 KAT6BQ8WYB5 2073 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 AFAP1L2Q8N4X5 818 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 PPIP5K2O43314 1243 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 PPP2R3AQ06190 1150 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 EAPPQ56P03 285 aaPredicted RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 ZHX1Q9UKY1 873 aaPredicted RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 H7C1D1 291 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 ZBTB7BO15156 539 aaPredicted RBP20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 KBTBD3Q8NAB2 608 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 MYL10Q9BUA6 226 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 AOX1Q06278 1338 aa20.2■□□□□ 0.82
SFSWAP-203ENST00000535236 APBA3O96018 575 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 ATP10BO94823 1461 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 BCRP11274 1271 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 CARD10Q9BWT7 1032 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 ZNF532Q9HCE3 1301 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 CEP57Q86XR8 500 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 SUCLG2Q96I99 432 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 FAM227BQ96M60 508 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 UIMC1Q96RL1 719 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 SNX14Q9Y5W7 946 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 KMT5BQ4FZB7 885 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 CABP7Q86V35 215 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 MLKLQ8NB16 471 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 STMN2Q93045 179 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 NLRX1Q86UT6 975 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 DNAJC10Q8IXB1 793 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 PPFIBP2Q8ND30 876 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 SPC25Q9HBM1 224 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 SLC5A4Q9NY91 659 aa20.19■□□□□ 0.82
SFSWAP-203ENST00000535236 SECISBP2LQ93073 1101 aaKnown RBP20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 RIOK1Q9BRS2 568 aaKnown RBP20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 AS3MTQ9HBK9 375 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 NELFCDQ8IXH7 590 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 GSDMBQ8TAX9 411 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 KCNG1Q9UIX4 513 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 CSADQ9Y600 493 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 PIK3C2GO75747 1445 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 TFAP4Q01664 338 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 BEND3Q5T5X7 828 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 RPUSD2Q8IZ73 545 aaKnown RBP20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 P4HA1P13674 534 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 EVCP57679 992 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 LACTBP83111 547 aaPredicted RBP20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 RAD51AP2Q09MP3 1159 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 GLG1Q92896 1179 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 ASIC3Q9UHC3 531 aa20.18■□□□□ 0.82
SFSWAP-203ENST00000535236 OTUD7BQ6GQQ9 843 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 LGR6Q9HBX8 967 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 USP40Q9NVE5 1235 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 OTUD6AQ7L8S5 288 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 USP21Q9UK80 565 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 ZBTB24O43167 697 aaPredicted RBP20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 HPDP32754 393 aaPredicted RBP20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 ZAP70P43403 619 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 FANCCQ00597 558 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 GCKRQ14397 625 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 PHKBQ93100 1093 aa20.17■□□□□ 0.82
SFSWAP-203ENST00000535236 CLCN1P35523 988 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 BAG6P46379 1132 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TAOK1Q7L7X3 1001 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 ORAI2Q96SN7 254 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 CLSTN2Q9H4D0 955 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 DNAJC5BQ9UF47 199 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 ABCC10Q5T3U5 1492 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TUBB2AQ13885 445 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 CHURC1Q8WUH1 139 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TUBB2BQ9BVA1 445 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 CARD14Q9BXL6 1004 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 AFG3L2Q9Y4W6 797 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 YWHAEP62258 255 aaKnown RBP20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TNFAIP1Q13829 316 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 REXO1Q8N1G1 1221 aaKnown RBP20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 KRT40Q6A162 431 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms