RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DNAJB2P25686 324 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 GCLCP48506 637 aaPredicted RBP8.22□□□□□ -1.09
CD44-237ENST00000534082 TBC1D22AQ8WUA7 517 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 SOCS4Q8WXH5 440 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 BADQ92934 168 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 KCTD12Q96CX2 325 aaKnown RBP8.22□□□□□ -1.09
CD44-237ENST00000534082 RNPC3Q96LT9 517 aaKnown RBP8.22□□□□□ -1.09
CD44-237ENST00000534082 WDR70Q9NW82 654 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 IQSEC3Q9UPP2 1182 aaPredicted RBP8.22□□□□□ -1.09
CD44-237ENST00000534082 VPS9D1Q9Y2B5 631 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 ATP11BQ9Y2G3 1177 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 CHMP3Q9Y3E7 222 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 PCDHGA10Q9Y5H3 936 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 MAST3O60307 1309 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 AK9Q5TCS8 1911 aa8.21□□□□□ -1.09
CD44-237ENST00000534082 PHF20L1A8MW92 1017 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 XRCC5P13010 732 aaKnown RBP8.21□□□□□ -1.1
CD44-237ENST00000534082 NFIAQ12857 509 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 GCKRQ14397 625 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 PDE3AQ14432 1141 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 AKNAD1Q5T1N1 836 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 TRMT44Q8IYL2 757 aaKnown RBP8.21□□□□□ -1.1
CD44-237ENST00000534082 GAS2L1Q99501 681 aaPredicted RBP8.21□□□□□ -1.1
CD44-237ENST00000534082 MRIQ9BWK5 157 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 CNNM1Q9NRU3 951 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 DOCK2Q92608 1830 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 DOCK1Q14185 1865 aa8.21□□□□□ -1.1
CD44-237ENST00000534082 LOC285556D6RIA3 1793 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 FRAT2O75474 233 aaPredicted RBP8.2□□□□□ -1.1
CD44-237ENST00000534082 UBE4AQ14139 1066 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 CCL14Q16627 93 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 TAF7LQ5H9L4 462 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 TMEM31Q5JXX7 168 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 CCDC30Q5VVM6 783 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 TYW1BQ6NUM6 668 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 HHIPL2Q6UWX4 724 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 LDHAL6AQ6ZMR3 332 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 CCDC84Q86UT8 332 aaPredicted RBP8.2□□□□□ -1.1
CD44-237ENST00000534082 CCDC146Q8IYE0 955 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 PROCA1Q8NCQ7 364 aaPredicted RBP8.2□□□□□ -1.1
CD44-237ENST00000534082 TIFAQ96CG3 184 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 ZNF594Q96JF6 807 aaPredicted RBP8.2□□□□□ -1.1
CD44-237ENST00000534082 NUDT12Q9BQG2 462 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 ZNF576Q9H609 170 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 PDLIM7Q9NR12 457 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.2□□□□□ -1.1
CD44-237ENST00000534082 FAM198AQ9UFP1 575 aa8.2□□□□□ -1.1
CD44-237ENST00000534082 PHIPQ8WWQ0 1821 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 CHD9Q3L8U1 2897 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 DNM1LO00429 736 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 FOXO4P98177 505 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 PABPC4Q13310 644 aaKnown RBP eCLIP8.19□□□□□ -1.1
CD44-237ENST00000534082 CCDC85BQ15834 202 aaPredicted RBP8.19□□□□□ -1.1
CD44-237ENST00000534082 TRIM60Q495X7 471 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 CDC42EP5Q6NZY7 148 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 VPS37DQ86XT2 251 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 DDX12PQ92771 950 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 APBA2Q99767 749 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 ZBED2Q9BTP6 218 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 ASCC2Q9H1I8 757 aaPredicted RBP8.19□□□□□ -1.1
CD44-237ENST00000534082 EPHX3Q9H6B9 360 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 MYH16Q9H6N6 1097 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 MORF4L1Q9UBU8 362 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 SUGT1Q9Y2Z0 365 aa8.19□□□□□ -1.1
CD44-237ENST00000534082 LRRFIP2Q9Y608 721 aaKnown RBP8.19□□□□□ -1.1
CD44-237ENST00000534082 REV3LO60673 3130 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 GOLGA8CPA6NN73 597 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 RGS2P41220 211 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 MRE11P49959 708 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 EPHB4P54760 987 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 TRIM26Q12899 539 aaPredicted RBP8.18□□□□□ -1.1
CD44-237ENST00000534082 CCDC57Q2TAC2 916 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 SH3RF1Q7Z6J0 888 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 FBXO33Q7Z6M2 555 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 ZFPM1Q8IX07 1006 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 C8orf58Q8NAV2 365 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 LPAR1Q92633 364 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 P2RX7Q99572 595 aaKnown RBP8.18□□□□□ -1.1
CD44-237ENST00000534082 PRDM12Q9H4Q4 367 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 CXXC1Q9P0U4 656 aaPredicted RBP8.18□□□□□ -1.1
CD44-237ENST00000534082 HCSTQ9UBK5 93 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 DDX20Q9UHI6 824 aaKnown RBP8.18□□□□□ -1.1
CD44-237ENST00000534082 DAGLAQ9Y4D2 1042 aa8.18□□□□□ -1.1
CD44-237ENST00000534082 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.17□□□□□ -1.1
CD44-237ENST00000534082 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.17□□□□□ -1.1
CD44-237ENST00000534082 TRIM43BA6NCK2 446 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 MSCO60682 206 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 PEX10O60683 326 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 CTNND1O60716 968 aaKnown RBP8.17□□□□□ -1.1
CD44-237ENST00000534082 ZNF853P0CG23 659 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 BMP1P13497 986 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 HMGCS2P54868 508 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 ADGRE1Q14246 886 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 DIXDC1Q155Q3 683 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 E2F4Q16254 413 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 LMBR1LQ6UX01 489 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 SLC39A5Q6ZMH5 540 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 USP6NLQ92738 828 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 TRIM43Q96BQ3 446 aaPredicted RBP8.17□□□□□ -1.1
CD44-237ENST00000534082 CHMP4AQ9BY43 222 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms