RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TTC28Q96AY4 2481 aa19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 TTC39AQ5SRH9 613 aa19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 NAA16Q6N069 864 aaPredicted RBP19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 FTSJ3Q8IY81 847 aaKnown RBP19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 CLUAP1Q96AJ1 413 aa19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 TRIM34Q9BYJ4 488 aa19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 MTMR10Q9NXD2 777 aa19.28■□□□□ 0.68
CHMP4A-207ENST00000533523 BMP8BP34820 402 aa19.27■□□□□ 0.68
CHMP4A-207ENST00000533523 TRIM32Q13049 653 aa19.27■□□□□ 0.68
CHMP4A-207ENST00000533523 OS9Q13438 667 aaPredicted RBP19.27■□□□□ 0.68
CHMP4A-207ENST00000533523 MAPKAPK5Q8IW41 473 aa19.27■□□□□ 0.68
CHMP4A-207ENST00000533523 TMOD4Q9NZQ9 345 aa19.27■□□□□ 0.68
CHMP4A-207ENST00000533523 FLT1P17948 1338 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 BAG3O95817 575 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 PLCG2P16885 1265 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 CAPN2P17655 700 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 NECAB2Q7Z6G3 386 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 C7orf61Q8IZ16 206 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 CRACR2BQ8N4Y2 399 aaPredicted RBP19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 TGFBRAP1Q8WUH2 860 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 DHX36Q9H2U1 1008 aaKnown RBP19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 PI4KBQ9UBF8 816 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 STXBP5LQ9Y2K9 1186 aa19.26■□□□□ 0.67
CHMP4A-207ENST00000533523 NAV1Q8NEY1 1877 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 GDF11O95390 407 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 ASNSP08243 561 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 SYN1P17600 705 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 SH3D19Q5HYK7 790 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 DBNDD2Q9BQY9 259 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 DNAJC18Q9H819 358 aa19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 SUPT16HQ9Y5B9 1047 aaKnown RBP19.25■□□□□ 0.67
CHMP4A-207ENST00000533523 MAGEA10P43363 369 aaPredicted RBP19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 BACE1P56817 501 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 SHROOM1Q2M3G4 852 aaPredicted RBP19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 TNNI3KQ59H18 835 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 ADGRA1Q86SQ6 560 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 TMEM57Q8N5G2 664 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 WDR18Q9BV38 432 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 MORF4L1Q9UBU8 362 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 SAP30BPQ9UHR5 308 aaKnown RBP19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 FPGT-TNNI3KV9GXZ4 949 aa19.24■□□□□ 0.67
CHMP4A-207ENST00000533523 PEX10O60683 326 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 MS4A1P11836 297 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 CCDC158Q5M9N0 1113 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 GPR153Q6NV75 609 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 TRIB2Q92519 343 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 HMX1Q9NP08 348 aaPredicted RBP19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 GJD2Q9UKL4 321 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 PALD1Q9ULE6 856 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 MYH8P13535 1937 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 PFASO15067 1338 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 RPTORQ8N122 1335 aa19.23■□□□□ 0.67
CHMP4A-207ENST00000533523 CYP2B6P20813 491 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 HERVK_113P62684 666 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 JAG1P78504 1218 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 PDE3AQ14432 1141 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 LRIT3Q3SXY7 679 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 ANKLE1Q8NAG6 615 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 ZBTB21Q9ULJ3 1066 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 LTBP2Q14767 1821 aa19.22■□□□□ 0.67
CHMP4A-207ENST00000533523 CYP2E1P05181 493 aaPredicted RBP19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 HLA-DOAP06340 250 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 PRKAR2AP13861 404 aaKnown RBP19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 ITPRIPQ8IWB1 547 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 SOCS4Q8WXH5 440 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 GUCD1Q96NT3 240 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 P2RX7Q99572 595 aaKnown RBP19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 PAGR1Q9BTK6 254 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 C1orf115Q9H7X2 142 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 TXNRD2Q9NNW7 524 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 GPR108Q9NPR9 543 aa19.21■□□□□ 0.67
CHMP4A-207ENST00000533523 USP17L10C9JJH3 530 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 HOXA7P31268 230 aaPredicted RBP19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 ZAP70P43403 619 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 POLA2Q14181 598 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 CCAR1Q8IX12 1150 aaKnown RBP19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 GPRC5AQ8NFJ5 357 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 NUDT12Q9BQG2 462 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 NBPF3Q9H094 633 aa19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 PIH1D3Q9NQM4 214 aaKnown RBP19.2■□□□□ 0.66
CHMP4A-207ENST00000533523 REV3LO60673 3130 aa19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 C19orf81C9J6K1 198 aa19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 SURF6O75683 361 aaKnown RBP19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 ZKSCAN1P17029 563 aaPredicted RBP19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 PPP4CP60510 307 aa19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 DYNLL1P63167 89 aaKnown RBP19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 C11orf49Q9H6J7 331 aa19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 CWC22Q9HCG8 908 aaKnown RBP19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 TLR7Q9NYK1 1049 aaKnown RBP19.19■□□□□ 0.66
CHMP4A-207ENST00000533523 CYP7A1P22680 504 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 MAPK4P31152 587 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 RRP1P56182 461 aaKnown RBP19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 ERVK-9P63128 1117 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 ERVK-24P63145 666 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 ZYXQ15942 572 aaKnown RBP19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 FOXP4Q8IVH2 680 aaPredicted RBP19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 FEZ1Q99689 392 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 GINM1Q9NU53 330 aa19.18■□□□□ 0.66
CHMP4A-207ENST00000533523 IDH1O75874 414 aaKnown RBP19.17■□□□□ 0.66
CHMP4A-207ENST00000533523 GH2P01242 217 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms