RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SLBPQ14493 270 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-233ENST00000531141 NKG7Q16617 165 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 SLC6A19Q695T7 634 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 GATA6Q92908 595 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 ACSF2Q96CM8 615 aaPredicted RBP6.18□□□□□ -1.42
CD44-233ENST00000531141 MFSD14AQ96MC6 490 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 TBC1D32Q96NH3 1257 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 C8orf37Q96NL8 207 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 METTL22Q9BUU2 404 aaPredicted RBP6.18□□□□□ -1.42
CD44-233ENST00000531141 TJP2Q9UDY2 1190 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 ZNRF3Q9ULT6 936 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 MCM4P33991 863 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 SOX9P48436 509 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 YARSP54577 528 aaKnown RBP6.17□□□□□ -1.42
CD44-233ENST00000531141 PRAMEF13Q5VWM6 474 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 GK5Q6ZS86 529 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 MCATQ8IVS2 390 aaKnown RBP6.17□□□□□ -1.42
CD44-233ENST00000531141 SLFN12Q8IYM2 578 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 MFSD2AQ8NA29 543 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 FAM13CQ8NE31 585 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 SEC16BQ96JE7 1060 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 FERD3LQ96RJ6 166 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 SEMA6BQ9H3T3 888 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 LGR6Q9HBX8 967 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 GMIPQ9P107 970 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 KLHL3Q9UH77 587 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 STRIP2Q9ULQ0 834 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 EFR3BQ9Y2G0 817 aa6.17□□□□□ -1.42
CD44-233ENST00000531141 MEIS3P2A8K0S8 358 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 LRRFIP1Q32MZ4 808 aaKnown RBP6.16□□□□□ -1.42
CD44-233ENST00000531141 PRSS36Q5K4E3 855 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 TOP6BLQ8N6T0 577 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 CYB5D2Q8WUJ1 264 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 PRDM10Q9NQV6 1147 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 ATG3Q9NT62 314 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 GINM1Q9NU53 330 aa6.16□□□□□ -1.42
CD44-233ENST00000531141 F13BP05160 661 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 FAM87AP0C7U9 286 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 ADMP35318 185 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 CLCQ05315 142 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 CYP27C1Q4G0S4 372 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 OVOS1Q6IE37 1185 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 ZNF746Q6NUN9 644 aaPredicted RBP6.15□□□□□ -1.42
CD44-233ENST00000531141 VPS37DQ86XT2 251 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 FBXL6Q8N531 539 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 SLC43A3Q8NBI5 491 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 SHKBP1Q8TBC3 707 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 TMEM40Q8WWA1 233 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 MIPEPQ99797 713 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 DPH2Q9BQC3 489 aaPredicted RBP6.15□□□□□ -1.42
CD44-233ENST00000531141 DUSP23Q9BVJ7 150 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 OSBPL1AQ9BXW6 950 aa6.15□□□□□ -1.42
CD44-233ENST00000531141 DNAJA2O60884 412 aa6.14□□□□□ -1.43
CD44-233ENST00000531141 ATF4P18848 351 aaPredicted RBP6.14□□□□□ -1.43
CD44-233ENST00000531141 NASPP49321 788 aaPredicted RBP6.14□□□□□ -1.43
CD44-233ENST00000531141 OGFOD3Q6PK18 319 aa6.14□□□□□ -1.43
CD44-233ENST00000531141 KRTAP1-3Q8IUG1 177 aa6.14□□□□□ -1.43
CD44-233ENST00000531141 ZDHHC13Q8IUH4 622 aa6.14□□□□□ -1.43
CD44-233ENST00000531141 PPT2Q9UMR5 302 aa6.14□□□□□ -1.43
CD44-233ENST00000531141 FAM170BA6NMN3 283 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 WDR64B1ANS9 1081 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 ETV3P41162 512 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 ARID5AQ03989 594 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 NAALADL2Q58DX5 795 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 DUSP27Q5VZP5 1158 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 LETMD1Q6P1Q0 360 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 ZNF765Q7L2R6 523 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 NLRC3Q7RTR2 1065 aa6.13□□□□□ -1.43
CD44-233ENST00000531141 RBBP8NLQ8NC74 664 aaPredicted RBP6.13□□□□□ -1.43
CD44-233ENST00000531141 SRRTQ9BXP5 876 aaKnown RBP6.13□□□□□ -1.43
CD44-233ENST00000531141 SLC22A31A6NKX4 558 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 LEFTY1O75610 366 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 SLITRK5O94991 958 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 FGRP09769 529 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 ARSHQ5FYA8 562 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 CDCP2Q5VXM1 449 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 CCDC81Q6ZN84 652 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 TAB3Q8N5C8 712 aaPredicted RBP6.12□□□□□ -1.43
CD44-233ENST00000531141 OR6P1Q8NGX9 317 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 XAGE3Q8WTP9 111 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 COX4I2Q96KJ9 171 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 CNNM2Q9H8M5 875 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 PRDM5Q9NQX1 630 aaPredicted RBP6.12□□□□□ -1.43
CD44-233ENST00000531141 PIM2Q9P1W9 311 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 GTF2IRD1Q9UHL9 959 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 MAPK8IP1Q9UQF2 711 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 LEMD3Q9Y2U8 911 aa6.12□□□□□ -1.43
CD44-233ENST00000531141 CHURC1-FNTBB4DL54 471 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 TNFRSF10CO14798 259 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 RAG1P15918 1043 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 ITGB7P26010 798 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 CCNFP41002 786 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 EIF6P56537 245 aaKnown RBP6.11□□□□□ -1.43
CD44-233ENST00000531141 FBXW10Q5XX13 1052 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 LSRQ86X29 649 aaPredicted RBP6.11□□□□□ -1.43
CD44-233ENST00000531141 PHACTR4Q8IZ21 702 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 DNAJB8Q8NHS0 232 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 CCDC74BQ96LY2 380 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 CRBNQ96SW2 442 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 GMLQ99445 158 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms