RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CYP2B6P20813 491 aa10.39□□□□□ -0.75
CD44-232ENST00000531118 SMAD3P84022 425 aaKnown RBP10.39□□□□□ -0.75
CD44-232ENST00000531118 DIXDC1Q155Q3 683 aa10.39□□□□□ -0.75
CD44-232ENST00000531118 C9orf50Q5SZB4 431 aa10.39□□□□□ -0.75
CD44-232ENST00000531118 TSR2Q969E8 191 aaKnown RBP10.39□□□□□ -0.75
CD44-232ENST00000531118 MROH5Q6ZUA9 1318 aa10.38□□□□□ -0.75
CD44-232ENST00000531118 CCND3P30281 292 aaPredicted RBP10.38□□□□□ -0.75
CD44-232ENST00000531118 GCLCP48506 637 aaPredicted RBP10.38□□□□□ -0.75
CD44-232ENST00000531118 SHHQ15465 462 aa10.38□□□□□ -0.75
CD44-232ENST00000531118 CAVIN4Q5BKX8 364 aa10.38□□□□□ -0.75
CD44-232ENST00000531118 PROCA1Q8NCQ7 364 aaPredicted RBP10.38□□□□□ -0.75
CD44-232ENST00000531118 SOCS4Q8WXH5 440 aa10.38□□□□□ -0.75
CD44-232ENST00000531118 ADAMTS8Q9UP79 889 aa10.38□□□□□ -0.75
CD44-232ENST00000531118 SIPA1L1O43166 1804 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 KIF16BQ96L93 1317 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 RTP1P59025 263 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 CACNB2Q08289 660 aaPredicted RBP10.37□□□□□ -0.75
CD44-232ENST00000531118 MAP3K12Q12852 859 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 TWISTNBQ3B726 338 aaPredicted RBP10.37□□□□□ -0.75
CD44-232ENST00000531118 ZFPM1Q8IX07 1006 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 VGLL2Q8N8G2 317 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 MORF4L1Q9UBU8 362 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 PRKAG2Q9UGJ0 569 aa10.37□□□□□ -0.75
CD44-232ENST00000531118 LRRFIP2Q9Y608 721 aaKnown RBP10.37□□□□□ -0.75
CD44-232ENST00000531118 MUC6Q6W4X9 2439 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 GRM8O00222 908 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 APAF1O14727 1248 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 SLURP2P0DP57 97 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 PRDX5P30044 214 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 RGS3P49796 1198 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 ARSIQ5FYB1 569 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 METTL24Q5JXM2 366 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 BEND3Q5T5X7 828 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 SH3BP5LQ7L8J4 393 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 NUDT12Q9BQG2 462 aa10.36□□□□□ -0.75
CD44-232ENST00000531118 ASCC2Q9H1I8 757 aaPredicted RBP10.36□□□□□ -0.75
CD44-232ENST00000531118 CTNND1O60716 968 aaKnown RBP10.35□□□□□ -0.75
CD44-232ENST00000531118 XRCC5P13010 732 aaKnown RBP10.35□□□□□ -0.75
CD44-232ENST00000531118 HMGCS2P54868 508 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 PABPC4Q13310 644 aaKnown RBP eCLIP10.35□□□□□ -0.75
CD44-232ENST00000531118 PDE3AQ14432 1141 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 NBR1Q14596 966 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 CCL14Q16627 93 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 TRMT44Q8IYL2 757 aaKnown RBP10.35□□□□□ -0.75
CD44-232ENST00000531118 ADAMTS19Q8TE59 1207 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 APBA2Q99767 749 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 SENP6Q9GZR1 1112 aaPredicted RBP10.35□□□□□ -0.75
CD44-232ENST00000531118 USP40Q9NVE5 1235 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 TCF20Q9UGU0 1960 aaKnown RBP10.35□□□□□ -0.75
CD44-232ENST00000531118 ZNF236Q9UL36 1845 aa10.35□□□□□ -0.75
CD44-232ENST00000531118 SYNGAP1Q96PV0 1343 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 DDTLA6NHG4 134 aaPredicted RBP10.34□□□□□ -0.75
CD44-232ENST00000531118 F6X3S4 739 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 ST18O60284 1047 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 ENTPD3O75355 529 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 ZEB1P37275 1124 aaPredicted RBP10.34□□□□□ -0.75
CD44-232ENST00000531118 MAP3K10Q02779 954 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 LRRC24Q50LG9 513 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 WDR66Q8TBY9 1149 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 SUCLG2Q96I99 432 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 IDI2Q9BXS1 227 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 PRDM5Q9NQX1 630 aaPredicted RBP10.34□□□□□ -0.75
CD44-232ENST00000531118 PDLIM7Q9NR12 457 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 THEGQ9P2T0 379 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 ATP11BQ9Y2G3 1177 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 PLXNA1Q9UIW2 1896 aa10.34□□□□□ -0.75
CD44-232ENST00000531118 PEX10O60683 326 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 PDE8BO95263 885 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 RGS2P41220 211 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 GRIN2CQ14957 1233 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 PUM3Q15397 648 aaKnown RBP10.33□□□□□ -0.76
CD44-232ENST00000531118 ZSCAN29Q8IWY8 852 aaPredicted RBP10.33□□□□□ -0.76
CD44-232ENST00000531118 USP6NLQ92738 828 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 UHRF1Q96T88 793 aaPredicted RBP10.33□□□□□ -0.76
CD44-232ENST00000531118 TXNRD2Q9NNW7 524 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 DDX4Q9NQI0 724 aaKnown RBP10.33□□□□□ -0.76
CD44-232ENST00000531118 GAKO14976 1311 aa10.33□□□□□ -0.76
CD44-232ENST00000531118 GBF1Q92538 1859 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 CDK5RAP2Q96SN8 1893 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 FAM196BA6NMK8 535 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 DNM1LO00429 736 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 IFIT1P09914 478 aaKnown RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 NUDT7P0C024 238 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 FGFR2P21802 821 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 IRX3P78415 501 aaPredicted RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 SPP2Q13103 211 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 GPR142Q7Z601 462 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 ZNF280CQ8ND82 737 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 ATXN2LQ8WWM7 1075 aaKnown RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 BADQ92934 168 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 FAM163AQ96GL9 167 aaPredicted RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 KAZALD1Q96I82 304 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 RNPC3Q96LT9 517 aaKnown RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 TBC1D2Q9BYX2 928 aa10.32□□□□□ -0.76
CD44-232ENST00000531118 DDX20Q9UHI6 824 aaKnown RBP10.32□□□□□ -0.76
CD44-232ENST00000531118 FOCADQ5VW36 1801 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 LDHBP07195 334 aaKnown RBP10.31□□□□□ -0.76
CD44-232ENST00000531118 DNAJB2P25686 324 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 MAPK4P31152 587 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 PICALMQ13492 652 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms