RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PTGER2P43116 358 aa24.06■■□□□ 1.44
VPS28-209ENST00000528142 MXD3Q9BW11 206 aa24.06■■□□□ 1.44
VPS28-209ENST00000528142 SAP30BPQ9UHR5 308 aaKnown RBP24.06■■□□□ 1.44
VPS28-209ENST00000528142 POLR3DP05423 398 aaPredicted RBP24.05■■□□□ 1.44
VPS28-209ENST00000528142 CALM1P0DP23 149 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 CALM2P0DP24 149 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 CALM3P0DP25 149 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 DPEP1P16444 411 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 GUCY1A2P33402 732 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 CEBPZQ03701 1054 aaKnown RBP24.05■■□□□ 1.44
VPS28-209ENST00000528142 RCSD1Q6JBY9 416 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 TRIM22Q8IYM9 498 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 RBSNQ9H1K0 784 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 RTEL1Q9NZ71 1219 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 SNED1Q8TER0 1413 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 G3V3G9 751 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 LETM1O95202 739 aaPredicted RBP24.05■■□□□ 1.44
VPS28-209ENST00000528142 LIG1P18858 919 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 TFAP4Q01664 338 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 FUT2Q10981 343 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 DCAF8Q5TAQ9 597 aa24.05■■□□□ 1.44
VPS28-209ENST00000528142 CMTR1Q8N1G2 835 aaKnown RBP24.05■■□□□ 1.44
VPS28-209ENST00000528142 TTF2Q9UNY4 1162 aaKnown RBP24.05■■□□□ 1.44
VPS28-209ENST00000528142 GOLGA6L4A6NEF3 574 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 MYSM1Q5VVJ2 828 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 KLHL34Q8N239 644 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 ANKS1AQ92625 1134 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 DBNDD1Q9H9R9 158 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 IL17RBQ9NRM6 502 aa24.04■■□□□ 1.44
VPS28-209ENST00000528142 NAV1Q8NEY1 1877 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 F8W031 263 aaPredicted RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 DEXIO95424 95 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 DGKHQ86XP1 1220 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 MKNK2Q9HBH9 465 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 KCNQ5Q9NR82 932 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 TCP11L1Q9NUJ3 509 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 RBM28Q9NW13 759 aaKnown RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 ZNF219Q9P2Y4 722 aaPredicted RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 MYH15Q9Y2K3 1946 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 GOLGB1Q14789 3259 aaKnown RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 DDX60LQ5H9U9 1706 aaKnown RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 CC2D2BQ6DHV5 1058 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 SLC44A5Q8NCS7 719 aa24.03■■□□□ 1.44
VPS28-209ENST00000528142 RNF26Q9BY78 433 aaPredicted RBP24.03■■□□□ 1.44
VPS28-209ENST00000528142 U2AF2P26368 475 aaKnown RBP eCLIP24.02■■□□□ 1.44
VPS28-209ENST00000528142 TRIM29Q14134 588 aa24.02■■□□□ 1.44
VPS28-209ENST00000528142 HHIPL2Q6UWX4 724 aa24.02■■□□□ 1.44
VPS28-209ENST00000528142 C16orf86Q6ZW13 317 aa24.02■■□□□ 1.44
VPS28-209ENST00000528142 CCDC82Q8N4S0 544 aa24.02■■□□□ 1.44
VPS28-209ENST00000528142 POLR3EQ9NVU0 708 aa24.02■■□□□ 1.44
VPS28-209ENST00000528142 RASA1P20936 1047 aa24.01■■□□□ 1.43
VPS28-209ENST00000528142 FKBP1AP62942 108 aaKnown RBP24.01■■□□□ 1.43
VPS28-209ENST00000528142 CDK5RAP2Q96SN8 1893 aa24.01■■□□□ 1.43
VPS28-209ENST00000528142 POLD1P28340 1107 aa24■■□□□ 1.43
VPS28-209ENST00000528142 NASPP49321 788 aaPredicted RBP24■■□□□ 1.43
VPS28-209ENST00000528142 CCDC178Q5BJE1 867 aa24■■□□□ 1.43
VPS28-209ENST00000528142 STRIP1Q5VSL9 837 aa24■■□□□ 1.43
VPS28-209ENST00000528142 ZNF444Q8N0Y2 327 aaPredicted RBP24■■□□□ 1.43
VPS28-209ENST00000528142 LINC00301Q8NCQ3 95 aa24■■□□□ 1.43
VPS28-209ENST00000528142 TSPY26PQ9H489 355 aa24■■□□□ 1.43
VPS28-209ENST00000528142 ZNF287Q9HBT7 754 aa24■■□□□ 1.43
VPS28-209ENST00000528142 CLIC4Q9Y696 253 aa24■■□□□ 1.43
VPS28-209ENST00000528142 ECM29Q5VYK3 1845 aa24■■□□□ 1.43
VPS28-209ENST00000528142 PRPF3O43395 683 aaKnown RBP24■■□□□ 1.43
VPS28-209ENST00000528142 ECE2O60344 883 aa24■■□□□ 1.43
VPS28-209ENST00000528142 PLEKHA8P1O95397 391 aa24■■□□□ 1.43
VPS28-209ENST00000528142 CDK8P49336 464 aa24■■□□□ 1.43
VPS28-209ENST00000528142 TMTC3Q6ZXV5 915 aa24■■□□□ 1.43
VPS28-209ENST00000528142 GNL3Q9BVP2 549 aaKnown RBP eCLIP24■■□□□ 1.43
VPS28-209ENST00000528142 WDHD1O75717 1129 aaPredicted RBP23.99■■□□□ 1.43
VPS28-209ENST00000528142 YEATS4O95619 227 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 MMP1P03956 469 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 SCNN1DP51172 638 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 PKN1Q16512 942 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 DACT2Q5SW24 774 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 BICD2Q8TD16 824 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 MRIQ9BWK5 157 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 DACT1Q9NYF0 836 aa23.99■■□□□ 1.43
VPS28-209ENST00000528142 TSPY3P0CV98 308 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 TSPY8P0CW00 308 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 KIAA2012Q0VF49 1180 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 APOBEC3HQ6NTF7 200 aaKnown RBP23.98■■□□□ 1.43
VPS28-209ENST00000528142 USP17L3A6NCW0 530 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 USP17L4A6NCW7 530 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 USP17L1Q7RTZ2 530 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 CTCFLQ8NI51 663 aaPredicted RBP23.98■■□□□ 1.43
VPS28-209ENST00000528142 TEKT1Q969V4 418 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 DDX19AQ9NUU7 478 aaKnown RBP23.98■■□□□ 1.43
VPS28-209ENST00000528142 USP40Q9NVE5 1235 aa23.98■■□□□ 1.43
VPS28-209ENST00000528142 AOC3Q16853 763 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 ANO1Q5XXA6 986 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 SUPT20HQ8NEM7 779 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 MAP3K14Q99558 947 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 FUCA2Q9BTY2 467 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 KAT14Q9H8E8 782 aa23.97■■□□□ 1.43
VPS28-209ENST00000528142 DDX4Q9NQI0 724 aaKnown RBP23.97■■□□□ 1.43
VPS28-209ENST00000528142 C21orf2O43822 256 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 NR1I2O75469 434 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 CDC42EP5Q6NZY7 148 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 SRBD1Q8N5C6 995 aaKnown RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms