RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 CCDC102BQ68D86 513 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 LHX8Q68G74 356 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 TMEM57Q8N5G2 664 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 MAFAQ8NHW3 353 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-203ENST00000527916 CDX2Q99626 313 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-203ENST00000527916 SENP6Q9GZR1 1112 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-203ENST00000527916 COL2A1P02458 1487 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-203ENST00000527916 MROH7-TTC4A0A0A0MT08 1334 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 MUC3AQ02505 3323 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 A0A1B0GUL7 405 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 FAM196BA6NMK8 535 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 HOXA7P31268 230 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-203ENST00000527916 GTF3C2Q8WUA4 911 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-203ENST00000527916 CWC22Q9HCG8 908 aaKnown RBP12.94□□□□□ -0.34
CPSF1-203ENST00000527916 PLXNB2O15031 1838 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 CDH23Q9H251 3354 aa12.94□□□□□ -0.34
CPSF1-203ENST00000527916 GPR75-ASB3A0A0A6YYF3 556 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 PNMA6EA0A0J9YXQ4 647 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 CCND3P30281 292 aaPredicted RBP12.93□□□□□ -0.34
CPSF1-203ENST00000527916 BACE1P56817 501 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 HERVK_113P62684 666 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 ATP8B2P98198 1209 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 TFCP2Q12800 502 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 MVPQ14764 893 aaKnown RBP12.93□□□□□ -0.34
CPSF1-203ENST00000527916 ERICH6Q7L0X2 663 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 XAGE2Q96GT9 111 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 P2RX7Q99572 595 aaKnown RBP12.93□□□□□ -0.34
CPSF1-203ENST00000527916 APBA2Q99767 749 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 WDR18Q9BV38 432 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 SEMA6BQ9H3T3 888 aa12.93□□□□□ -0.34
CPSF1-203ENST00000527916 HERC5Q9UII4 1024 aaKnown RBP12.93□□□□□ -0.34
CPSF1-203ENST00000527916 C19orf81C9J6K1 198 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 MSCO60682 206 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 GLRX3O76003 335 aaKnown RBP12.92□□□□□ -0.34
CPSF1-203ENST00000527916 LDHCP07864 332 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 ASNSP08243 561 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 ADORA1P30542 326 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 RHBDL3P58872 404 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 ERVK-9P63128 1117 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 ERVK-24P63145 666 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 GSTO1P78417 241 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 G3BP1Q13283 466 aaKnown RBP eCLIP12.92□□□□□ -0.34
CPSF1-203ENST00000527916 MTMR2Q13614 643 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 RASGRF1Q13972 1273 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 POLA2Q14181 598 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 MFSD14CQ5VZR4 134 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 GPR142Q7Z601 462 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 PLEKHH3Q7Z736 793 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 SSH3Q8TE77 659 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 USP6NLQ92738 828 aa12.92□□□□□ -0.34
CPSF1-203ENST00000527916 NCOR1O75376 2440 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 ATAD5Q96QE3 1844 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 ATN1P54259 1190 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-203ENST00000527916 MECOMQ03112 1051 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 CCL14Q16627 93 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 MORN1Q5T089 497 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 FTSJ3Q8IY81 847 aaKnown RBP12.91□□□□□ -0.34
CPSF1-203ENST00000527916 TXNRD2Q9NNW7 524 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 GPR108Q9NPR9 543 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 PI4KBQ9UBF8 816 aa12.91□□□□□ -0.34
CPSF1-203ENST00000527916 DNM1LO00429 736 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 FOSL2P15408 326 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 CCNA1P78396 465 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 LPAR1Q92633 364 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 NEUROD6Q96NK8 337 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 PAGR1Q9BTK6 254 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 DHX36Q9H2U1 1008 aaKnown RBP12.9□□□□□ -0.34
CPSF1-203ENST00000527916 RBPJLQ9UBG7 517 aa12.9□□□□□ -0.34
CPSF1-203ENST00000527916 DDX20Q9UHI6 824 aaKnown RBP12.9□□□□□ -0.34
CPSF1-203ENST00000527916 NOP58Q9Y2X3 529 aaKnown RBP12.9□□□□□ -0.34
CPSF1-203ENST00000527916 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-203ENST00000527916 USP17L10C9JJH3 530 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 MS4A1P11836 297 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 RLBP1P12271 317 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 ARID4AP29374 1257 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-203ENST00000527916 CNGA1P29973 690 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 RTP1P59025 263 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 SMAD3P84022 425 aaKnown RBP12.89□□□□□ -0.35
CPSF1-203ENST00000527916 MAP2K5Q13163 448 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 SHHQ15465 462 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 TEX11Q8IYF3 940 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 MYLIPQ8WY64 445 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 EDC3Q96F86 508 aaKnown RBP12.89□□□□□ -0.35
CPSF1-203ENST00000527916 NOL10Q9BSC4 688 aaKnown RBP12.89□□□□□ -0.35
CPSF1-203ENST00000527916 TRIM34Q9BYJ4 488 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 PORCNQ9H237 461 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 GINM1Q9NU53 330 aa12.89□□□□□ -0.35
CPSF1-203ENST00000527916 PEX10O60683 326 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 IGSF3O75054 1194 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 UQCRFS1P1P0C7P4 283 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 ATP2B2Q01814 1243 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 RRP1BQ14684 758 aaKnown RBP12.88□□□□□ -0.35
CPSF1-203ENST00000527916 Q3C1V9 767 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 GORABQ5T7V8 394 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 ITPRIPQ8IWB1 547 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 SPATA5Q8NB90 893 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 ARRDC4Q8NCT1 418 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 HMG20BQ9P0W2 317 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 ATP11BQ9Y2G3 1177 aa12.88□□□□□ -0.35
CPSF1-203ENST00000527916 MAST2Q6P0Q8 1798 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms