RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 C17orf50Q8WW18 174 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 NANOS1Q8WY41 292 aaKnown RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 EZH1Q92800 747 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 RMDN2Q96LZ7 410 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 MPHOSPH8Q99549 860 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 SLX1AQ9BQ83 275 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 COL25A1Q9BXS0 654 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 PARD6BQ9BYG5 372 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 OSBPL5Q9H0X9 879 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 BICC1Q9H694 974 aaKnown RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 VIPAS39Q9H9C1 493 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 PDE11AQ9HCR9 933 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 PRM3Q9NNZ6 103 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 ZBTB40Q9NUA8 1239 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 DDX19AQ9NUU7 478 aaKnown RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 RGL1Q9NZL6 768 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CEP126Q9P2H0 1117 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CAPN7Q9Y6W3 813 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 DAPK1P53355 1430 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 YTHDC2Q9H6S0 1430 aaKnown RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 DISP3Q9P2K9 1392 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 RPGRIP1LQ68CZ1 1315 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 ERICH2A1L162 156 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CDC14CA4D256 554 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6L9A6NEM1 432 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6L19H0YKK7 550 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 GIGYF1O75420 1035 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 FBXO45P0C2W1 286 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 ZSCAN22P10073 491 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 ITGA6P23229 1130 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 TPP2P29144 1249 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 ALDH1B1P30837 517 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 GBP2P32456 591 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 GCLCP48506 637 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 KRT76Q01546 638 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 GNL2Q13823 731 aaKnown RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 TUBB2AQ13885 445 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 DCTN1Q14203 1278 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 SNCBQ16143 134 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 ACBD5Q5T8D3 534 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 VPS53Q5VIR6 699 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 FOXD4L5Q5VV16 416 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 CWF19L1Q69YN2 538 aaKnown RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 RBM43Q6ZSC3 357 aaKnown RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 ARHGAP22Q7Z5H3 698 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 LUZP1Q86V48 1076 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 ITPRIPQ8IWB1 547 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CCDC146Q8IYE0 955 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 KDF1Q8NAX2 398 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 LRRN4CLQ8ND94 238 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 B4GALNT2Q8NHY0 566 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 FAM81AQ8TBF8 368 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 ZFAND2BQ8WV99 257 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 FOXD4L4Q8WXT5 416 aaPredicted RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 ZBTB10Q96DT7 871 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 IL17RAQ96F46 866 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CHAMP1Q96JM3 812 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 AGAP3Q96P47 875 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 TUBB2BQ9BVA1 445 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CARD6Q9BX69 1037 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 TRIM7Q9C029 511 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 SRCIN1Q9C0H9 1055 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 KLC4Q9NSK0 619 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 TRMT1Q9NXH9 659 aaKnown RBP6.61□□□□□ -1.35
CD44-225ENST00000527326 LMCD1Q9NZU5 365 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CHIC2Q9UKJ5 165 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 RAB21Q9UL25 225 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 CNPY2Q9Y2B0 182 aa6.61□□□□□ -1.35
CD44-225ENST00000527326 MED14O60244 1454 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 MSH6P52701 1360 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6L7A0A1B0GV03 622 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 ANKRD65E5RJM6 399 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 GPR37L1O60883 481 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 URI1O94763 535 aaPredicted RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 FERP16591 822 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 AARSP49588 968 aaKnown RBP eCLIP6.6□□□□□ -1.35
CD44-225ENST00000527326 ROR2Q01974 943 aaKnown RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 DEUP1Q05D60 604 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 PPP2R3AQ06190 1150 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 ANO6Q4KMQ2 910 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 BEND6Q5SZJ8 279 aaPredicted RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 GORABQ5T7V8 394 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 TTC22Q5TAA0 569 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 E4F1Q66K89 784 aaPredicted RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 SLC30A9Q6PML9 568 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 ATF7IPQ6VMQ6 1270 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 TTLL7Q6ZT98 887 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 SV2AQ7L0J3 742 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 TAX1BP1Q86VP1 789 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 HOMER1Q86YM7 354 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 TRIM42Q8IWZ5 723 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 SNRNP27Q8WVK2 155 aaKnown RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 LMBR1Q8WVP7 490 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 CCDC47Q96A33 483 aaKnown RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 SPDL1Q96EA4 605 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 ALS2CR12Q96Q35 445 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 PAGR1Q9BTK6 254 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 FAM204AQ9H8W3 233 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 CD248Q9HCU0 757 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 INCENPQ9NQS7 918 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms