RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PDE4B	Q07343	736 aa		24.68	■■□□□ 1.54
CD44-222	ENST00000526025	RRP1B	Q14684	758 aa	Known RBP	24.68	■■□□□ 1.54
CD44-222	ENST00000526025	WNK4	Q96J92	1243 aa		24.68	■■□□□ 1.54
CD44-222	ENST00000526025	ELP3	Q9H9T3	547 aa		24.68	■■□□□ 1.54
CD44-222	ENST00000526025	PTPRF	P10586	1907 aa		24.68	■■□□□ 1.54
CD44-222	ENST00000526025	SMIM22	K7EJ46	135 aa		24.67	■■□□□ 1.54
CD44-222	ENST00000526025	PTH1R	Q03431	593 aa		24.67	■■□□□ 1.54
CD44-222	ENST00000526025	NOG	Q13253	232 aa		24.67	■■□□□ 1.54
CD44-222	ENST00000526025	SPRYD7	Q5W111	196 aa		24.67	■■□□□ 1.54
CD44-222	ENST00000526025	SLC44A5	Q8NCS7	719 aa		24.67	■■□□□ 1.54
CD44-222	ENST00000526025	LSG1	Q9H089	658 aa	Known RBP	24.67	■■□□□ 1.54
CD44-222	ENST00000526025	PTPRA	P18433	802 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	PPIL2	Q13356	520 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	IMMT	Q16891	758 aa	Known RBP	24.66	■■□□□ 1.54
CD44-222	ENST00000526025	CYP4F22	Q6NT55	531 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	DNAJC5G	Q8N7S2	189 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	OPTN	Q96CV9	577 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	ZBTB21	Q9ULJ3	1066 aa		24.66	■■□□□ 1.54
CD44-222	ENST00000526025	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	24.66	■■□□□ 1.54
CD44-222	ENST00000526025	WDR33	Q9C0J8	1336 aa	Known RBP	24.65	■■□□□ 1.54
CD44-222	ENST00000526025	ZNF213	O14771	459 aa		24.65	■■□□□ 1.54
CD44-222	ENST00000526025	EPB41L2	O43491	1005 aa	Known RBP	24.65	■■□□□ 1.54
CD44-222	ENST00000526025	ORC4	O43929	436 aa		24.65	■■□□□ 1.54
CD44-222	ENST00000526025	VEGFB	P49765	207 aa		24.65	■■□□□ 1.54
CD44-222	ENST00000526025	ABCB5	Q2M3G0	1257 aa		24.65	■■□□□ 1.54
CD44-222	ENST00000526025	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	24.65	■■□□□ 1.54
CD44-222	ENST00000526025	RNF41	Q9H4P4	317 aa	Predicted RBP	24.65	■■□□□ 1.54
CD44-222	ENST00000526025	MKNK2	Q9HBH9	465 aa		24.65	■■□□□ 1.54
CD44-222	ENST00000526025	EIF5B	O60841	1220 aa	Known RBP	24.64	■■□□□ 1.54
CD44-222	ENST00000526025	RASA1	P20936	1047 aa		24.64	■■□□□ 1.54
CD44-222	ENST00000526025	MAP2K2	P36507	400 aa		24.64	■■□□□ 1.54
CD44-222	ENST00000526025	TMEM179	Q6ZVK1	233 aa		24.64	■■□□□ 1.54
CD44-222	ENST00000526025	REM2	Q8IYK8	340 aa	Predicted RBP	24.64	■■□□□ 1.54
CD44-222	ENST00000526025	CABP5	Q9NP86	173 aa		24.64	■■□□□ 1.54
CD44-222	ENST00000526025	ANO2	Q9NQ90	1003 aa		24.64	■■□□□ 1.54
CD44-222	ENST00000526025	PLIN4	Q96Q06	1357 aa		24.64	■■□□□ 1.53
CD44-222	ENST00000526025	USP17L5	A8MUK1	530 aa		24.63	■■□□□ 1.53
CD44-222	ENST00000526025	REC8	O95072	547 aa		24.63	■■□□□ 1.53
CD44-222	ENST00000526025	GDF11	O95390	407 aa		24.63	■■□□□ 1.53
CD44-222	ENST00000526025	STAG1	Q8WVM7	1258 aa		24.63	■■□□□ 1.53
CD44-222	ENST00000526025	KCNH4	Q9UQ05	1017 aa		24.63	■■□□□ 1.53
CD44-222	ENST00000526025	GH2	P01242	217 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	GJA5	P36382	358 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	JAG1	P78504	1218 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	CTDSPL2	Q05D32	466 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	AKNAD1	Q5T1N1	836 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	OTUD5	Q96G74	571 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	WDR18	Q9BV38	432 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	NBPF3	Q9H094	633 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	AS3MT	Q9HBK9	375 aa		24.62	■■□□□ 1.53
CD44-222	ENST00000526025	RBM8A	Q9Y5S9	174 aa	Known RBP	24.62	■■□□□ 1.53
CD44-222	ENST00000526025	CXCL11	O14625	94 aa		24.61	■■□□□ 1.53
CD44-222	ENST00000526025	HAND2	P61296	217 aa		24.61	■■□□□ 1.53
CD44-222	ENST00000526025	ZNF444	Q8N0Y2	327 aa	Predicted RBP	24.61	■■□□□ 1.53
CD44-222	ENST00000526025	AFG3L2	Q9Y4W6	797 aa		24.61	■■□□□ 1.53
CD44-222	ENST00000526025	ZHX2	Q9Y6X8	837 aa		24.61	■■□□□ 1.53
CD44-222	ENST00000526025	LOC285556	D6RIA3	1793 aa		24.6	■■□□□ 1.53
CD44-222	ENST00000526025	MANSC4	A6NHS7	340 aa	Predicted RBP	24.6	■■□□□ 1.53
CD44-222	ENST00000526025	AKR1B1	P15121	316 aa		24.6	■■□□□ 1.53
CD44-222	ENST00000526025	MFSD6	Q6ZSS7	791 aa		24.6	■■□□□ 1.53
CD44-222	ENST00000526025	TBC1D10C	Q8IV04	446 aa		24.6	■■□□□ 1.53
CD44-222	ENST00000526025	CNKSR2	Q8WXI2	1034 aa		24.6	■■□□□ 1.53
CD44-222	ENST00000526025	IRF6	O14896	467 aa		24.59	■■□□□ 1.53
CD44-222	ENST00000526025	GUCY1A2	P33402	732 aa		24.59	■■□□□ 1.53
CD44-222	ENST00000526025	GTF2A2	P52657	109 aa		24.59	■■□□□ 1.53
CD44-222	ENST00000526025	INHBE	P58166	350 aa		24.59	■■□□□ 1.53
CD44-222	ENST00000526025	ZNF280C	Q8ND82	737 aa		24.59	■■□□□ 1.53
CD44-222	ENST00000526025	TESPA1	A2RU30	521 aa	Predicted RBP	24.58	■■□□□ 1.53
CD44-222	ENST00000526025	PRDM1	O75626	825 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	CYP21A2	P08686	494 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	SNAPC2	Q13487	334 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	NECTIN1	Q15223	517 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	SHROOM1	Q2M3G4	852 aa	Predicted RBP	24.58	■■□□□ 1.53
CD44-222	ENST00000526025	NEDD1	Q8NHV4	660 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	CNNM2	Q9H8M5	875 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	KANSL2	Q9H9L4	492 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	TACC3	Q9Y6A5	838 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	MYH4	Q9Y623	1939 aa		24.58	■■□□□ 1.53
CD44-222	ENST00000526025	MPHOSPH10	O00566	681 aa	Known RBP	24.57	■■□□□ 1.52
CD44-222	ENST00000526025	SREBF2	Q12772	1141 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	SEPT2	Q15019	361 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	RAB3GAP1	Q15042	981 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	PPP4R3B	Q5MIZ7	849 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	STK11IP	Q8N1F8	1099 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	MS4A4A	Q96JQ5	239 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	24.57	■■□□□ 1.52
CD44-222	ENST00000526025	CEP350	Q5VT06	3117 aa		24.57	■■□□□ 1.52
CD44-222	ENST00000526025	IGKV6D-41	A0A0C4DH26	115 aa		24.56	■■□□□ 1.52
CD44-222	ENST00000526025	CETP	P11597	493 aa		24.56	■■□□□ 1.52
CD44-222	ENST00000526025	KIF23	Q02241	960 aa	Predicted RBP	24.56	■■□□□ 1.52
CD44-222	ENST00000526025	GRM1	Q13255	1194 aa		24.56	■■□□□ 1.52
CD44-222	ENST00000526025	RNF20	Q5VTR2	975 aa		24.56	■■□□□ 1.52
CD44-222	ENST00000526025	JMY	Q8N9B5	988 aa		24.56	■■□□□ 1.52
CD44-222	ENST00000526025	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	24.56	■■□□□ 1.52
CD44-222	ENST00000526025		A0A0G2JLL6	359 aa	Predicted RBP	24.55	■■□□□ 1.52
CD44-222	ENST00000526025	C19orf81	C9J6K1	198 aa		24.55	■■□□□ 1.52
CD44-222	ENST00000526025	AOC2	O75106	756 aa		24.55	■■□□□ 1.52
CD44-222	ENST00000526025	TSPY3	P0CV98	308 aa		24.55	■■□□□ 1.52
CD44-222	ENST00000526025	TSPY8	P0CW00	308 aa		24.55	■■□□□ 1.52
CD44-222	ENST00000526025	TM4SF4	P48230	202 aa		24.55	■■□□□ 1.52

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