RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 PRAMEF13Q5VWM6 474 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 LETMD1Q6P1Q0 360 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 RELL1Q8IUW5 271 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 SPACA3Q8IXA5 215 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 MFSD2AQ8NA29 543 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 BCL2L13Q9BXK5 485 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 TNKS2Q9H2K2 1166 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 TJP2Q9UDY2 1190 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 SNX11Q9Y5W9 270 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 TACC3Q9Y6A5 838 aa4.2□□□□□ -1.74
CD44-216ENST00000525293 MINDY4BA8MYZ0 360 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 PRR33A8MZF0 331 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 FUT4P22083 530 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 LMNB2Q03252 620 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 ZNF326Q5BKZ1 582 aaKnown RBP4.19□□□□□ -1.74
CD44-216ENST00000525293 SFRP5Q5T4F7 317 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 DIEXFQ68CQ4 756 aaKnown RBP4.19□□□□□ -1.74
CD44-216ENST00000525293 BNC2Q6ZN30 1099 aaPredicted RBP4.19□□□□□ -1.74
CD44-216ENST00000525293 CDH24Q86UP0 819 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 PI4K2BQ8TCG2 481 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 GIPC2Q8TF65 315 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 TMEM87BQ96K49 555 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 TMEM74Q96NL1 305 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 DPH2Q9BQC3 489 aaPredicted RBP4.19□□□□□ -1.74
CD44-216ENST00000525293 RSRP1Q9BUV0 290 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 MAPK8IP1Q9UQF2 711 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 RNF114Q9Y508 228 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 CORINQ9Y5Q5 1042 aa4.19□□□□□ -1.74
CD44-216ENST00000525293 FAM155AB1AL88 458 aaPredicted RBP4.18□□□□□ -1.74
CD44-216ENST00000525293 BPNT1O95861 308 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 CBX7O95931 251 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 F13A1P00488 732 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 RNASE1P07998 156 aaKnown RBP4.18□□□□□ -1.74
CD44-216ENST00000525293 ITGAEP38570 1179 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 FAM160A1Q05DH4 1040 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 PDE4BQ07343 736 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 ANGEL2Q5VTE6 544 aaKnown RBP4.18□□□□□ -1.74
CD44-216ENST00000525293 CDKAL1Q5VV42 579 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 SLC6A19Q695T7 634 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 CCDC84Q86UT8 332 aaPredicted RBP4.18□□□□□ -1.74
CD44-216ENST00000525293 MRPL41Q8IXM3 137 aaKnown RBP4.18□□□□□ -1.74
CD44-216ENST00000525293 ASB11Q8WXH4 323 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 GATAD2BQ8WXI9 593 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 ADAMTS6Q9UKP5 1117 aa4.18□□□□□ -1.74
CD44-216ENST00000525293 ZBTB7CA1YPR0 619 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 FAM221AA4D161 298 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 UPK3BL1B0FP48 263 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 UPK3BL2E5RIL1 263 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 CILPO75339 1184 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 PLCG1P19174 1290 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 IKZF1Q13422 519 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 PWP1Q13610 501 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 TMCO4Q5TGY1 634 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 MCATQ8IVS2 390 aaKnown RBP4.17□□□□□ -1.74
CD44-216ENST00000525293 MFSD4AQ8N468 514 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 GOLM1Q8NBJ4 401 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 ACSF2Q96CM8 615 aaPredicted RBP4.17□□□□□ -1.74
CD44-216ENST00000525293 RHOVQ96L33 236 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 HSPA12BQ96MM6 686 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 FMNL2Q96PY5 1086 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 RC3H2Q9HBD1 1191 aaKnown RBP4.17□□□□□ -1.74
CD44-216ENST00000525293 COPRSQ9NQ92 184 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 PRDM7Q9NQW5 492 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 MBNL3Q9NUK0 354 aaKnown RBP4.17□□□□□ -1.74
CD44-216ENST00000525293 ADAM30Q9UKF2 790 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 PITPNM2Q9BZ72 1349 aa4.17□□□□□ -1.74
CD44-216ENST00000525293 H3BS24 57 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 GRIN3BO60391 1043 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 ZNF865P0CJ78 1059 aaPredicted RBP4.16□□□□□ -1.74
CD44-216ENST00000525293 JUNBP17275 347 aaPredicted RBP4.16□□□□□ -1.74
CD44-216ENST00000525293 ITGB5P18084 799 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 CYP7A1P22680 504 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 TXKP42681 527 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 CLCN7P51798 805 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 ZP2Q05996 745 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 SNAP47Q5SQN1 464 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 ZNF746Q6NUN9 644 aaPredicted RBP4.16□□□□□ -1.74
CD44-216ENST00000525293 SLC23A3Q6PIS1 610 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 C22orf34Q6ZV56 151 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 FBXO27Q8NI29 283 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 ASIC4Q96FT7 647 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 ATP13A1Q9HD20 1204 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 SEMA3GQ9NS98 782 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 KBTBD4Q9NVX7 518 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 CAPN6Q9Y6Q1 641 aa4.16□□□□□ -1.74
CD44-216ENST00000525293 BIN1O00499 593 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 TLR3O15455 904 aaKnown RBP4.15□□□□□ -1.75
CD44-216ENST00000525293 PAPLNO95428 1278 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 TNK2Q07912 1038 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 MRPL58Q14197 206 aaKnown RBP4.15□□□□□ -1.75
CD44-216ENST00000525293 LRRN4CLQ8ND94 238 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 FAM13CQ8NE31 585 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 ZSWIM5Q9P217 1185 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 REV1Q9UBZ9 1251 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 CEP131Q9UPN4 1083 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 POLR3KQ9Y2Y1 108 aaPredicted RBP4.15□□□□□ -1.75
CD44-216ENST00000525293 ST14Q9Y5Y6 855 aa4.15□□□□□ -1.75
CD44-216ENST00000525293 CHURC1-FNTBB4DL54 471 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 GARTP22102 1010 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms