RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 PI4KBQ9UBF8 816 aa15.4■□□□□ 0.06
CPNE3-205ENST00000522240 SERPINB13Q9UIV8 391 aa15.4■□□□□ 0.06
CPNE3-205ENST00000522240 PCNTO95613 3336 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 RIOK3O14730 519 aaKnown RBP15.39■□□□□ 0.05
CPNE3-205ENST00000522240 KDM4AO75164 1064 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 TCP10Q12799 353 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 SLC4A8Q2Y0W8 1093 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 RRP12Q5JTH9 1297 aaKnown RBP15.39■□□□□ 0.05
CPNE3-205ENST00000522240 RBM26Q5T8P6 1007 aaKnown RBP15.39■□□□□ 0.05
CPNE3-205ENST00000522240 CYB5R4Q7L1T6 521 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 SH3BP5LQ7L8J4 393 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 ZFPM1Q8IX07 1006 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 TOMM22Q9NS69 142 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 HACL1Q9UJ83 578 aa15.39■□□□□ 0.05
CPNE3-205ENST00000522240 GREB1LQ9C091 1923 aaPredicted RBP15.39■□□□□ 0.05
CPNE3-205ENST00000522240 IQCA1LA6NCM1 817 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 DDTLA6NHG4 134 aaPredicted RBP15.38■□□□□ 0.05
CPNE3-205ENST00000522240 CDK8P49336 464 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 TOB2Q14106 344 aaPredicted RBP15.38■□□□□ 0.05
CPNE3-205ENST00000522240 SART3Q15020 963 aaKnown RBP15.38■□□□□ 0.05
CPNE3-205ENST00000522240 ZSCAN29Q8IWY8 852 aaPredicted RBP15.38■□□□□ 0.05
CPNE3-205ENST00000522240 JMYQ8N9B5 988 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 KLRG1Q96E93 195 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 DYNLL2Q96FJ2 89 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 TCEANC2Q96MN5 208 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 MKNK2Q9HBH9 465 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 HERC5Q9UII4 1024 aaKnown RBP15.38■□□□□ 0.05
CPNE3-205ENST00000522240 PPP2R3BQ9Y5P8 575 aa15.38■□□□□ 0.05
CPNE3-205ENST00000522240 SH2B2O14492 632 aaPredicted RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 RASA1P20936 1047 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 FGD1P98174 961 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 Q6ZUG5 572 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 USP50Q70EL3 339 aaPredicted RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 IQCA1Q86XH1 822 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 FOXP4Q8IVH2 680 aaPredicted RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 STK11IPQ8N1F8 1099 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 CRACR2BQ8N4Y2 399 aaPredicted RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 SLC44A5Q8NCS7 719 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 ZSCAN31Q96LW9 406 aaPredicted RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 CSRNP1Q96S65 589 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 INCENPQ9NQS7 918 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 GGA3Q9NZ52 723 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 ZSWIM5Q9P217 1185 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 ANGEL1Q9UNK9 670 aaKnown RBP15.37■□□□□ 0.05
CPNE3-205ENST00000522240 LIMCH1Q9UPQ0 1083 aa15.37■□□□□ 0.05
CPNE3-205ENST00000522240 TSPY2A6NKD2 308 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 RANBP6O60518 1105 aaKnown RBP15.36■□□□□ 0.05
CPNE3-205ENST00000522240 PRDM1O75626 825 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 SHMT1P34896 483 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 LIFRP42702 1097 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 HIRAP54198 1017 aaPredicted RBP15.36■□□□□ 0.05
CPNE3-205ENST00000522240 EVCP57679 992 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 RASA3Q14644 834 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 CCDC178Q5BJE1 867 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 ANGEL2Q5VTE6 544 aaKnown RBP15.36■□□□□ 0.05
CPNE3-205ENST00000522240 ZNF444Q8N0Y2 327 aaPredicted RBP15.36■□□□□ 0.05
CPNE3-205ENST00000522240 SMC1BQ8NDV3 1235 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 NKX2-3Q8TAU0 364 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 UBAC1Q9BSL1 405 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 TRIM34Q9BYJ4 488 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 DNAJC18Q9H819 358 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 SH2B1Q9NRF2 756 aaPredicted RBP15.36■□□□□ 0.05
CPNE3-205ENST00000522240 PGAP2Q9UHJ9 254 aa15.36■□□□□ 0.05
CPNE3-205ENST00000522240 ERICH2A1L162 156 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 IFIT3O14879 490 aaKnown RBP15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TBC1D12O60347 775 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 EPHX2P34913 555 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TMEM67Q5HYA8 995 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 CHST3Q7LGC8 479 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 SGMS1Q86VZ5 419 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 IGDCC4Q8TDY8 1250 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 ZC3H15Q8WU90 426 aaKnown RBP15.35■□□□□ 0.05
CPNE3-205ENST00000522240 BRF1Q92994 677 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TMX3Q96JJ7 454 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 CCDC17Q96LX7 622 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 LRRC2Q9BYS8 371 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TMEM39BQ9GZU3 492 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 RRAGCQ9HB90 399 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 LY9Q9HBG7 655 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TCP11L1Q9NUJ3 509 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 ASTN2O75129 1339 aaPredicted RBP15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TNKSO95271 1327 aa15.35■□□□□ 0.05
CPNE3-205ENST00000522240 TSPY3P0CV98 308 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 TSPY8P0CW00 308 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 RCAN1P53805 252 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 MAP3K10Q02779 954 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 CUL4AQ13619 759 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 SEC23AQ15436 765 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 TATDN1Q6P1N9 297 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 TMTC2Q8N394 836 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 NEDD1Q8NHV4 660 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 HOOK2Q96ED9 719 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 TEPSINQ96N21 525 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 ZSCAN10Q96SZ4 725 aaPredicted RBP15.34■□□□□ 0.05
CPNE3-205ENST00000522240 DAXXQ9UER7 740 aaPredicted RBP15.34■□□□□ 0.05
CPNE3-205ENST00000522240 NID2Q14112 1375 aa15.34■□□□□ 0.05
CPNE3-205ENST00000522240 PITPNM1O00562 1244 aa15.33■□□□□ 0.04
CPNE3-205ENST00000522240 TFAP4Q01664 338 aa15.33■□□□□ 0.04
CPNE3-205ENST00000522240 WTAPQ15007 396 aa15.33■□□□□ 0.04
CPNE3-205ENST00000522240 FAM47AQ5JRC9 791 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms