RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SNCAIPQ9Y6H5 919 aa18.19■□□□□ 0.5
LSM1-203ENST00000520755 MYH4Q9Y623 1939 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 UNCXA6NJT0 531 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 CTNND1O60716 968 aaKnown RBP18.18■□□□□ 0.5
LSM1-203ENST00000520755 GDF11O95390 407 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 SHMT1P34896 483 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 RBM25P49756 843 aaKnown RBP18.18■□□□□ 0.5
LSM1-203ENST00000520755 MKRN3Q13064 507 aaKnown RBP18.18■□□□□ 0.5
LSM1-203ENST00000520755 COL9A3Q14050 684 aaPredicted RBP18.18■□□□□ 0.5
LSM1-203ENST00000520755 RASAL3Q86YV0 1011 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 SCYL3Q8IZE3 742 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 NKX2-3Q8TAU0 364 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 CAPNS2Q96L46 248 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 C22orf23Q9BZE7 217 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 SWAP70Q9UH65 585 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 SNX14Q9Y5W7 946 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 PHIPQ8WWQ0 1821 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 NEDD4P46934 1319 aa18.18■□□□□ 0.5
LSM1-203ENST00000520755 CAP2P40123 477 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 ECE1P42892 770 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 CDK8P49336 464 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 IMMTQ16891 758 aaKnown RBP18.17■□□□□ 0.5
LSM1-203ENST00000520755 CERKLQ49MI3 558 aaPredicted RBP18.17■□□□□ 0.5
LSM1-203ENST00000520755 NOL9Q5SY16 702 aaKnown RBP18.17■□□□□ 0.5
LSM1-203ENST00000520755 TATDN1Q6P1N9 297 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 C16orf86Q6ZW13 317 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 CNKSR2Q8WXI2 1034 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 CCDC102AQ96A19 550 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 IL17RAQ96F46 866 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 PICK1Q9NRD5 415 aa18.17■□□□□ 0.5
LSM1-203ENST00000520755 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.17■□□□□ 0.5
LSM1-203ENST00000520755 ZNF213O14771 459 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 SLC3A2P08195 630 aaKnown RBP18.16■□□□□ 0.5
LSM1-203ENST00000520755 SLC10A3P09131 477 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 VEGFBP49765 207 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 SHROOM1Q2M3G4 852 aaPredicted RBP18.16■□□□□ 0.5
LSM1-203ENST00000520755 OPTNQ96CV9 577 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 OTUD5Q96G74 571 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 WNK4Q96J92 1243 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 KIF2CQ99661 725 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 INCENPQ9NQS7 918 aa18.16■□□□□ 0.5
LSM1-203ENST00000520755 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.16■□□□□ 0.5
LSM1-203ENST00000520755 FAM155AB1AL88 458 aaPredicted RBP18.15■□□□□ 0.5
LSM1-203ENST00000520755 FGRP09769 529 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 JAG1P78504 1218 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 ADCK5Q3MIX3 580 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 TSGA10IPQ3SY00 556 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 ERO1BQ86YB8 467 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 STAG1Q8WVM7 1258 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 MKNK2Q9HBH9 465 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 TAOK2Q9UL54 1235 aa18.15■□□□□ 0.5
LSM1-203ENST00000520755 WDR33Q9C0J8 1336 aaKnown RBP18.15■□□□□ 0.5
LSM1-203ENST00000520755 SPDYE5A6NIY4 337 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 E7EWF7 191 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 MPHOSPH10O00566 681 aaKnown RBP18.14■□□□□ 0.49
LSM1-203ENST00000520755 AOC2O75106 756 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 PRDM1O75626 825 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 GH2P01242 217 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 MCCP23508 829 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 ABCB5Q2M3G0 1257 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 SPRYD7Q5W111 196 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 CCDC84Q86UT8 332 aaPredicted RBP18.14■□□□□ 0.49
LSM1-203ENST00000520755 UPF2Q9HAU5 1272 aaKnown RBP18.14■□□□□ 0.49
LSM1-203ENST00000520755 ZBTB21Q9ULJ3 1066 aa18.14■□□□□ 0.49
LSM1-203ENST00000520755 THSD7BQ9C0I4 1608 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 ASNSP08243 561 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 PTPRAP18433 802 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 GJA5P36382 358 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 ANAPC15P60006 121 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 PDE4BQ07343 736 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 AKNAD1Q5T1N1 836 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 RNF20Q5VTR2 975 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 ZNF287Q9HBT7 754 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 CABP5Q9NP86 173 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 ZHX2Q9Y6X8 837 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 PTPRFP10586 1907 aa18.13■□□□□ 0.49
LSM1-203ENST00000520755 ZBTB48P10074 688 aaPredicted RBP18.12■□□□□ 0.49
LSM1-203ENST00000520755 AKR1B1P15121 316 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 PPATQ06203 517 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 NOGQ13253 232 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 RAB3GAP1Q15042 981 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 DNAJC5GQ8N7S2 189 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 TOMM22Q9NS69 142 aa18.12■□□□□ 0.49
LSM1-203ENST00000520755 ORC4O43929 436 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 RASA1P20936 1047 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 PPIL2Q13356 520 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 RRP12Q5JTH9 1297 aaKnown RBP18.11■□□□□ 0.49
LSM1-203ENST00000520755 MB21D2Q8IYB1 491 aaPredicted RBP18.11■□□□□ 0.49
LSM1-203ENST00000520755 ZNF444Q8N0Y2 327 aaPredicted RBP18.11■□□□□ 0.49
LSM1-203ENST00000520755 CCDC17Q96LX7 622 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 ZIC5Q96T25 663 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 GINM1Q9NU53 330 aa18.11■□□□□ 0.49
LSM1-203ENST00000520755 CEP350Q5VT06 3117 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 PLIN4Q96Q06 1357 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 USP17L5A8MUK1 530 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 B4E1Z4 1266 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 IRF6O14896 467 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 ZKSCAN1P17029 563 aaPredicted RBP18.1■□□□□ 0.49
LSM1-203ENST00000520755 KIF23Q02241 960 aaPredicted RBP18.1■□□□□ 0.49
LSM1-203ENST00000520755 SEPT2Q15019 361 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms