RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ZMYM6O95789 1325 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 CCDC171Q6TFL3 1326 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 WDR33Q9C0J8 1336 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 MYH1P12882 1939 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 SLC10A3P09131 477 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 SLURP2P0DP57 97 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 PCP11498 1178 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 GSPT1P15170 499 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 LDLRAD1Q5T700 205 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 CLMNQ96JQ2 1002 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 TMEM121BQ9BXQ6 578 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 PUS7LQ9H0K6 701 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 ARMT1Q9H993 441 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 MCM9Q9NXL9 1143 aa9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 SAP30BPQ9UHR5 308 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-222ENST00000515847 FAM196BA6NMK8 535 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 FAM155AB1AL88 458 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 PATL2C9JE40 543 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 TBC1D12O60347 775 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 AOC2O75106 756 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 NMIQ13287 307 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 VGLL4Q14135 290 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 SLC4A8Q2Y0W8 1093 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 CWC27Q6UX04 472 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 FOXP4Q8IVH2 680 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 ANKRD13AQ8IZ07 590 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 SDR42E1Q8WUS8 393 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 OSBP2Q969R2 916 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 WRNIP1Q96S55 665 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 STRBPQ96SI9 672 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 RNF41Q9H4P4 317 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 DCP1AQ9NPI6 582 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 PICK1Q9NRD5 415 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 SERPINB13Q9UIV8 391 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 PALD1Q9ULE6 856 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 BOLA1Q9Y3E2 137 aa9.23□□□□□ -0.93
LIMCH1-222ENST00000515847 M0R2C6 588 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 RIOK3O14730 519 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 PRKAB2O43741 272 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 REC8O95072 547 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 INPP5BP32019 993 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 MAP3K9P80192 1104 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 PDE4BQ07343 736 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 RNF20Q5VTR2 975 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 SKAP1Q86WV1 359 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 EFCAB3Q8N7B9 438 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 ZKSCAN4Q969J2 545 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 CCDC102AQ96A19 550 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 RNF25Q96BH1 459 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 ZIC5Q96T25 663 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 SEC62Q99442 399 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 DSCC1Q9BVC3 393 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 ELP3Q9H9T3 547 aa9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 BAZ2AQ9UIF9 1905 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-222ENST00000515847 DOCK1Q14185 1865 aa9.21□□□□□ -0.93
LIMCH1-222ENST00000515847 A0A0D9SFI3 127 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 EPB41L2O43491 1005 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 ASNSP08243 561 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 MCCP23508 829 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 CHMLP26374 656 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 GJA5P36382 358 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 MAP3K10Q02779 954 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 NOGQ13253 232 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 IMMTQ16891 758 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 SBK1Q52WX2 424 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 NOL9Q5SY16 702 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 SLC10A4Q96EP9 437 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 WNK4Q96J92 1243 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 CCDC17Q96LX7 622 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 SH2D4AQ9H788 454 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 DNAJC18Q9H819 358 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 AS3MTQ9HBK9 375 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 CABP5Q9NP86 173 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 ZNF112Q9UJU3 913 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 SNCAIPQ9Y6H5 919 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 ATAD5Q96QE3 1844 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 ROBO3Q96MS0 1386 aa9.21□□□□□ -0.94
LIMCH1-222ENST00000515847 LAMB1P07942 1786 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 PHF20L1A8MW92 1017 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 CTNND1O60716 968 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 ZBTB48P10074 688 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 CYP2D6P10635 497 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 TRDNQ13061 729 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 ALX1Q15699 326 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 SPRYD7Q5W111 196 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 CCDC129Q6ZRS4 1044 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 SCYL3Q8IZE3 742 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 IFNL3Q8IZI9 196 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 OPTNQ96CV9 577 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 FAM227BQ96M60 508 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 CNNM2Q9H8M5 875 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 MKNK2Q9HBH9 465 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 EPB41L4AQ9HCS5 686 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 GTF3C3Q9Y5Q9 886 aa9.2□□□□□ -0.94
LIMCH1-222ENST00000515847 SPDYE5A6NIY4 337 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 GSG1L2A8MUP6 293 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms