RNA–Protein interactions for RNA: ENST00000515711.1

LMNA-224, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-224	ENST00000515711	CYP2D7	A0A087X1C5	515 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	TSPY2	A6NKD2	308 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	C21orf2	O43822	256 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	USP17L8	P0C7I0	530 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	VEGFA	P15692	232 aa	Predicted RBP	13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	RTN1	Q16799	776 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	AOC3	Q16853	763 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	DACT2	Q5SW24	774 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	IFIT1B	Q5T764	474 aa	Known RBP	13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	CATIP	Q7Z7H3	387 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	MAPKAPK5	Q8IW41	473 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	ZNF654	Q8IZM8	581 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	ZDHHC15	Q96MV8	337 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	INCENP	Q9NQS7	918 aa		13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	RBM28	Q9NW13	759 aa	Known RBP	13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	ORC3	Q9UBD5	711 aa	Predicted RBP	13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	DDX49	Q9Y6V7	483 aa	Known RBP	13.93	□□□□□ -0.18
LMNA-224	ENST00000515711	PRPF40A	O75400	957 aa	Known RBP	13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	CYP2D6	P10635	497 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	IFNAR1	P17181	557 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	RASSF7	Q02833	373 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	ATL3	Q6DD88	541 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	C16orf86	Q6ZW13	317 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	TTC6	Q86TZ1	520 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	TRIM22	Q8IYM9	498 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	ENAH	Q8N8S7	591 aa	Predicted RBP	13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	NKX2-3	Q8TAU0	364 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	C8orf76	Q96K31	380 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	CREBZF	Q9NS37	354 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	TCP11L1	Q9NUJ3	509 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	PIM2	Q9P1W9	311 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	SERPINA10	Q9UK55	444 aa		13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	COL2A1	P02458	1487 aa	Predicted RBP	13.92	□□□□□ -0.18
LMNA-224	ENST00000515711	IARS	P41252	1262 aa	Known RBP	13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	CRK	P46108	304 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	RGS19	P49795	217 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	REST	Q13127	1097 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	DGKH	Q86XP1	1220 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	STK11IP	Q8N1F8	1099 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	ZKSCAN3	Q9BRR0	538 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	MKNK2	Q9HBH9	465 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	ISY1	Q9ULR0	285 aa	Known RBP	13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	CNTNAP1	P78357	1384 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	PLIN4	Q96Q06	1357 aa		13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	GREB1L	Q9C091	1923 aa	Predicted RBP	13.91	□□□□□ -0.18
LMNA-224	ENST00000515711	ELP1	O95163	1332 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711		F8W031	263 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	NPM3	O75607	178 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	FMNL1	O95466	1100 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	HLA-DOA	P06340	250 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	HSPA8	P11142	646 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	FDPS	P14324	419 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	SSRP1	Q08945	709 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	DALRD3	Q5D0E6	543 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	FANCB	Q8NB91	859 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	SYAP1	Q96A49	352 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	MAP3K14	Q99558	947 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	SENP2	Q9HC62	589 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	SWAP70	Q9UH65	585 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	CFAP45	Q9UL16	551 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	SIPA1L1	O43166	1804 aa		13.9	□□□□□ -0.18
LMNA-224	ENST00000515711	GLTPD2	A6NH11	291 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	PRDM1	O75626	825 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	TSPY3	P0CV98	308 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	TSPY8	P0CW00	308 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	CDC27	P30260	824 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	UBE2H	P62256	183 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	DNM1	Q05193	864 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	TRIM29	Q14134	588 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	NTRK3	Q16288	839 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	BRAP	Q7Z569	592 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	LARGE2	Q8N3Y3	721 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	FBXO18	Q8NFZ0	1043 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	ANKS1A	Q92625	1134 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	ZNF396	Q96N95	335 aa	Predicted RBP	13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	USP40	Q9NVE5	1235 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	SAP30BP	Q9UHR5	308 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	CNPY2	Q9Y2B0	182 aa		13.89	□□□□□ -0.19
LMNA-224	ENST00000515711	POTEC	B2RU33	542 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	FIBP	O43427	364 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	WDHD1	O75717	1129 aa	Predicted RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	DEXI	O95424	95 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	RXRA	P19793	462 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	KIF5B	P33176	963 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	ADD1	P35611	737 aa	Known RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	VEGFB	P49765	207 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	SCNN1D	P51172	638 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	PLCD1	P51178	756 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	TFAP4	Q01664	338 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	PPP4R3B	Q5MIZ7	849 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	CDC42EP5	Q6NZY7	148 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	USP48	Q86UV5	1035 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	RAB11FIP4	Q86YS3	637 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	NIM1K	Q8IY84	436 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	CTCFL	Q8NI51	663 aa	Predicted RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	NUP133	Q8WUM0	1156 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms