RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 EHD4Q9H223 541 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 DNAJC18Q9H819 358 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 ZBTB21Q9ULJ3 1066 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 MAST2Q6P0Q8 1798 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 UBXN2AP68543 259 aa16.53■□□□□ 0.24
TCOF1-215ENST00000515516 PRKCZQ05513 592 aa16.53■□□□□ 0.24
TCOF1-215ENST00000515516 CERKLQ49MI3 558 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-215ENST00000515516 COA7Q96BR5 231 aa16.53■□□□□ 0.24
TCOF1-215ENST00000515516 CABP5Q9NP86 173 aa16.53■□□□□ 0.24
TCOF1-215ENST00000515516 GH2P01242 217 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 FAM110CQ1W6H9 321 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 PRPF38BQ5VTL8 546 aaKnown RBP16.52■□□□□ 0.24
TCOF1-215ENST00000515516 ZSCAN25Q6NSZ9 544 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 TATDN1Q6P1N9 297 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 SLAIN1Q8ND83 568 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 GPATCH3Q96I76 525 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 HAUS7Q99871 368 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 ASCC2Q9H1I8 757 aaPredicted RBP16.52■□□□□ 0.24
TCOF1-215ENST00000515516 MCM9Q9NXL9 1143 aa16.52■□□□□ 0.24
TCOF1-215ENST00000515516 DOCK1Q14185 1865 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 SMARCA5O60264 1052 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-215ENST00000515516 JAG1P78504 1218 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 RAB3GAP1Q15042 981 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 ABCB5Q2M3G0 1257 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L2Q6R6M4 530 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 EDC3Q96F86 508 aaKnown RBP16.51■□□□□ 0.23
TCOF1-215ENST00000515516 FEZ1Q99689 392 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 TAOK2Q9UL54 1235 aa16.51■□□□□ 0.23
TCOF1-215ENST00000515516 TCRBV5S4A2TA0A5A2 114 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 ADCY3O60266 1144 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 HOXA7P31268 230 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-215ENST00000515516 FLT3LGP49771 235 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 PLCD1P51178 756 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 AMOTL1Q8IY63 956 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 NKX2-3Q8TAU0 364 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 DDRGK1Q96HY6 314 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 GABRQQ9UN88 632 aa16.5■□□□□ 0.23
TCOF1-215ENST00000515516 ADD2P35612 726 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 USP14P54578 494 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 SHROOM1Q2M3G4 852 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-215ENST00000515516 LCORLQ8N3X6 602 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 SDR42E1Q8WUS8 393 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 DCTPP1Q9H773 170 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 ARMT1Q9H993 441 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 ECHDC1Q9NTX5 307 aa16.49■□□□□ 0.23
TCOF1-215ENST00000515516 MPHOSPH10O00566 681 aaKnown RBP16.48■□□□□ 0.23
TCOF1-215ENST00000515516 MBD4O95243 580 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 IRF5Q13568 498 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 UBE3CQ15386 1083 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 MTFR1Q15390 333 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 CCAR1Q8IX12 1150 aaKnown RBP16.48■□□□□ 0.23
TCOF1-215ENST00000515516 GTF3C2Q8WUA4 911 aaPredicted RBP16.48■□□□□ 0.23
TCOF1-215ENST00000515516 P2RX7Q99572 595 aaKnown RBP16.48■□□□□ 0.23
TCOF1-215ENST00000515516 RNF208Q9H0X6 261 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 ATP8A2Q9NTI2 1148 aa16.48■□□□□ 0.23
TCOF1-215ENST00000515516 CCL5P13501 91 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 SHMT1P34896 483 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 HERVK_113P62684 666 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 ZYXQ15942 572 aaKnown RBP16.47■□□□□ 0.23
TCOF1-215ENST00000515516 GPRC5AQ8NFJ5 357 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 PXYLP1Q8TE99 480 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 DCP1AQ9NPI6 582 aaPredicted RBP16.47■□□□□ 0.23
TCOF1-215ENST00000515516 EMILIN3Q9NT22 766 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 SWAP70Q9UH65 585 aa16.47■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L15C9J2P7 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L13C9JLJ4 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L11C9JVI0 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L18D6R9N7 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L22D6RA61 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L17D6RBQ6 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L19D6RCP7 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L20D6RJB6 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 USP17L24Q0WX57 530 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 CWC22Q9HCG8 908 aaKnown RBP16.46■□□□□ 0.23
TCOF1-215ENST00000515516 MORF4L1Q9UBU8 362 aa16.46■□□□□ 0.23
TCOF1-215ENST00000515516 ZBTB47Q9UFB7 747 aaPredicted RBP16.46■□□□□ 0.23
TCOF1-215ENST00000515516 GJB1P08034 283 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 ELNP15502 786 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 RRP1P56182 461 aaKnown RBP16.45■□□□□ 0.22
TCOF1-215ENST00000515516 GABPAQ06546 454 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 C12orf42Q96LP6 360 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 KIAA1683Q9H0B3 1180 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 SLC4A4Q9Y6R1 1079 aa16.45■□□□□ 0.22
TCOF1-215ENST00000515516 PRKAB2O43741 272 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 INHAP05111 366 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 CYP2D6P10635 497 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 SEPT2Q15019 361 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 LRRFIP1Q32MZ4 808 aaKnown RBP16.44■□□□□ 0.22
TCOF1-215ENST00000515516 SLFNL1Q499Z3 407 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 PAGR1Q9BTK6 254 aa16.44■□□□□ 0.22
TCOF1-215ENST00000515516 PHIPQ8WWQ0 1821 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 CAPN2P17655 700 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 MAPK4P31152 587 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 GJA8P48165 433 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 TMEM179Q6ZVK1 233 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 ACER1Q8TDN7 264 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 YTHDC1Q96MU7 727 aaKnown RBP16.43■□□□□ 0.22
TCOF1-215ENST00000515516 UNC93B1Q9H1C4 597 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 RBPJLQ9UBG7 517 aa16.43■□□□□ 0.22
TCOF1-215ENST00000515516 USP17L12C9JPN9 530 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms