RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 LNPKQ9C0E8 428 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 ZBTB47Q9UFB7 747 aaPredicted RBP13.86□□□□□ -0.19
VCAN-212ENST00000515397 CDK5RAP2Q96SN8 1893 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 USP17L12C9JPN9 530 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 USP17L21D6R901 530 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 RNF113AO15541 343 aaKnown RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 MYCP01106 439 aaPredicted RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 ASNSP08243 561 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 MX1P20591 662 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 SHMT1P34896 483 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 CERKLQ49MI3 558 aaPredicted RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 ZSCAN25Q6NSZ9 544 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 TATDN1Q6P1N9 297 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 ACER1Q8TDN7 264 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 SEC62Q99442 399 aaKnown RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 RWDD1Q9H446 243 aaPredicted RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 ZCCHC17Q9NP64 241 aaKnown RBP13.85□□□□□ -0.19
VCAN-212ENST00000515397 PTPN22Q9Y2R2 807 aa13.85□□□□□ -0.19
VCAN-212ENST00000515397 M0R2C6 588 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 MPHOSPH10O00566 681 aaKnown RBP13.84□□□□□ -0.19
VCAN-212ENST00000515397 ERC2O15083 957 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 PSMC4P43686 418 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 BACE1P56817 501 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 LACTBP83111 547 aaPredicted RBP13.84□□□□□ -0.19
VCAN-212ENST00000515397 GABPAQ06546 454 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 ABCB5Q2M3G0 1257 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 TMED8Q6PL24 325 aaPredicted RBP13.84□□□□□ -0.19
VCAN-212ENST00000515397 GCC1Q96CN9 775 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 TRIM47Q96LD4 638 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 STRBPQ96SI9 672 aaKnown RBP13.84□□□□□ -0.19
VCAN-212ENST00000515397 PARK7Q99497 189 aaKnown RBP13.84□□□□□ -0.19
VCAN-212ENST00000515397 WDR18Q9BV38 432 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 AS3MTQ9HBK9 375 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 AGTPBP1Q9UPW5 1226 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 TTC41PQ6P2S7 1318 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 ADGRA2Q96PE1 1338 aa13.84□□□□□ -0.19
VCAN-212ENST00000515397 GLRX3O76003 335 aaKnown RBP13.83□□□□□ -0.2
VCAN-212ENST00000515397 FMNL1O95466 1100 aaPredicted RBP13.83□□□□□ -0.2
VCAN-212ENST00000515397 GUCY1A2P33402 732 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 SEPT2Q15019 361 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 ANKRD13CQ8N6S4 541 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 SMCR8Q8TEV9 937 aaPredicted RBP13.83□□□□□ -0.2
VCAN-212ENST00000515397 FSD1Q9BTV5 496 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 EHD4Q9H223 541 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 EMILIN3Q9NT22 766 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 PTCH2Q9Y6C5 1203 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 MYH1P12882 1939 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 SALL3Q9BXA9 1300 aa13.83□□□□□ -0.2
VCAN-212ENST00000515397 DOCK1Q14185 1865 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 GSG1L2A8MUP6 293 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 USP17L10C9JJH3 530 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 BCRP11274 1271 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 PDE1AP54750 535 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 KIF22Q14807 665 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 SH3D19Q5HYK7 790 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 C12orf60Q5U649 245 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 CTR9Q6PD62 1173 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 CLEC10AQ8IUN9 316 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 APPBP2Q92624 585 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 P2RX7Q99572 595 aaKnown RBP13.82□□□□□ -0.2
VCAN-212ENST00000515397 ASCC2Q9H1I8 757 aaPredicted RBP13.82□□□□□ -0.2
VCAN-212ENST00000515397 CABP5Q9NP86 173 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 ATP8A2Q9NTI2 1148 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 TMOD4Q9NZQ9 345 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 PHIPQ8WWQ0 1821 aa13.82□□□□□ -0.2
VCAN-212ENST00000515397 LAMB1P07942 1786 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 ZSWIM8A7E2V4 1837 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 MINDY4BA8MYZ0 360 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 GPAA1O43292 621 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 APPP05067 770 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 AKR1B1P15121 316 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 CDK8P49336 464 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 CCDC129Q6ZRS4 1044 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 SMC5Q8IY18 1101 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 PROCA1Q8NCQ7 364 aaPredicted RBP13.81□□□□□ -0.2
VCAN-212ENST00000515397 SH3TC2Q8TF17 1288 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 FEZ1Q99689 392 aa13.81□□□□□ -0.2
VCAN-212ENST00000515397 FOCADQ5VW36 1801 aa13.8□□□□□ -0.2
VCAN-212ENST00000515397 OSBPP22059 807 aa13.8□□□□□ -0.2
VCAN-212ENST00000515397 EPB41L4AQ9HCS5 686 aaPredicted RBP13.8□□□□□ -0.2
VCAN-212ENST00000515397 STAP2Q9UGK3 403 aa13.8□□□□□ -0.2
VCAN-212ENST00000515397 GABRQQ9UN88 632 aa13.8□□□□□ -0.2
VCAN-212ENST00000515397 SLC45A1Q9Y2W3 748 aa13.8□□□□□ -0.2
VCAN-212ENST00000515397 A0A1W2PRG0 241 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 C19orf81C9J6K1 198 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 IRX3P78415 501 aaPredicted RBP13.79□□□□□ -0.2
VCAN-212ENST00000515397 AAMPQ13685 434 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 ARHGEF6Q15052 776 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 USP17L2Q6R6M4 530 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 CHD1LQ86WJ1 897 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 DDRGK1Q96HY6 314 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 TBC1D2Q9BYX2 928 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 GINM1Q9NU53 330 aa13.79□□□□□ -0.2
VCAN-212ENST00000515397 TRIM6-TRIM34B2RNG4 842 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 SLC34A2O95436 690 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 ZFYP08048 801 aaPredicted RBP13.78□□□□□ -0.2
VCAN-212ENST00000515397 ATP2B2Q01814 1243 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 NUCB1Q02818 461 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 PRKCZQ05513 592 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 KIAA1755Q5JYT7 1200 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms