RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CNNM3Q8NE01 707 aa17.07■□□□□ 0.32
NUP54-217ENST00000514987 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
NUP54-217ENST00000514987 PDCL3Q9H2J4 239 aa17.07■□□□□ 0.32
NUP54-217ENST00000514987 BRMS1Q9HCU9 246 aa17.07■□□□□ 0.32
NUP54-217ENST00000514987 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.07■□□□□ 0.32
NUP54-217ENST00000514987 TOB1P50616 345 aaPredicted RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 PDE4BQ07343 736 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 CCDC144BQ3MJ40 725 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 ERCC4Q92889 916 aaPredicted RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 FBXO2Q9UK22 296 aaPredicted RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 KCNJ14Q9UNX9 436 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 SRPRBQ9Y5M8 271 aaKnown RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 MYH2Q9UKX2 1941 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 USP17L12C9JPN9 530 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 USP17L21D6R901 530 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 CBFA2T2O43439 604 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 NRDCO43847 1150 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 KRT2P35908 639 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 LRMPQ12912 555 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 STK11IPQ8N1F8 1099 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 CCDC150Q8NCX0 1101 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 WDR66Q8TBY9 1149 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 KCND1Q9NSA2 647 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 SRP68Q9UHB9 627 aaKnown RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 DACH1Q9UI36 760 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 LEMD3Q9Y2U8 911 aa17.06■□□□□ 0.32
NUP54-217ENST00000514987 BAZ2AQ9UIF9 1905 aaKnown RBP17.06■□□□□ 0.32
NUP54-217ENST00000514987 LY75O60449 1722 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.05■□□□□ 0.32
NUP54-217ENST00000514987 BIN1O00499 593 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 GSTO1P78417 241 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 MYL5Q02045 173 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 FUT2Q10981 343 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 CCDC178Q5BJE1 867 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 CLIC6Q96NY7 704 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 PHF20Q9BVI0 1012 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 DCP1AQ9NPI6 582 aaPredicted RBP17.05■□□□□ 0.32
NUP54-217ENST00000514987 TAF1LQ8IZX4 1826 aa17.05■□□□□ 0.32
NUP54-217ENST00000514987 SPATA31A6Q5VVP1 1343 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 TRIM75PA6NK02 468 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 TM4SF1P30408 202 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 TROAPQ12815 778 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 NCAPHQ15003 741 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 LONRF3Q496Y0 759 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 TMTC3Q6ZXV5 915 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 CERS3Q8IU89 383 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 TRIML1Q8N9V2 468 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 CTCFLQ8NI51 663 aaPredicted RBP17.04■□□□□ 0.32
NUP54-217ENST00000514987 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
NUP54-217ENST00000514987 FBXW7Q969H0 707 aa17.04■□□□□ 0.32
NUP54-217ENST00000514987 A0A087WWV3 80 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 WTIPA6NIX2 430 aaPredicted RBP17.03■□□□□ 0.32
NUP54-217ENST00000514987 UBE2Q2LH0YL09 131 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 NPHP1O15259 732 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 ADRA2BP18089 450 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 RFC4P35249 363 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 KCNQ4P56696 695 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 PKN1Q16512 942 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 CT47A1Q5JQC4 288 aaPredicted RBP17.03■□□□□ 0.32
NUP54-217ENST00000514987 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 METTL16Q86W50 562 aaKnown RBP17.03■□□□□ 0.32
NUP54-217ENST00000514987 DZIP1Q86YF9 867 aaKnown RBP17.03■□□□□ 0.32
NUP54-217ENST00000514987 CCDC82Q8N4S0 544 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 TFCP2L1Q9NZI6 479 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 USP21Q9UK80 565 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 PAXBP1Q9Y5B6 917 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 IRS2Q9Y4H2 1338 aa17.03■□□□□ 0.32
NUP54-217ENST00000514987 SMC2O95347 1197 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 SKILP12757 684 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 KIF5BP33176 963 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 KCNJ6P48051 423 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 MDM2Q00987 491 aaPredicted RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 PNOCQ13519 176 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 GRAPQ13588 217 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 TPD52L1Q16890 204 aaPredicted RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 NT5DC1Q5TFE4 455 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 C15orf52Q6ZUT6 534 aaKnown RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 FILIP1Q7Z7B0 1213 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 GRAPLQ8TC17 118 aaPredicted RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 FERMT2Q96AC1 680 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 XPO4Q9C0E2 1151 aaKnown RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 BCL11BQ9C0K0 894 aaPredicted RBP17.02■□□□□ 0.32
NUP54-217ENST00000514987 AATFQ9NY61 560 aaKnown RBP eCLIP17.02■□□□□ 0.32
NUP54-217ENST00000514987 IFNKQ9P0W0 207 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.32
NUP54-217ENST00000514987 CYP2D7A0A087X1C5 515 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 KIF2AO00139 706 aaPredicted RBP17.02■□□□□ 0.31
NUP54-217ENST00000514987 LDHCP07864 332 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 KLRK1P26718 216 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 FANCCQ00597 558 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 NR5A1Q13285 461 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 POSTNQ15063 836 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 AMOTL1Q8IY63 956 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 MLKLQ8NB16 471 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 CABP5Q9NP86 173 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 PCDHB6Q9Y5E3 794 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 PCDHA5Q9Y5H7 936 aa17.02■□□□□ 0.31
NUP54-217ENST00000514987 V9GY48 417 aaPredicted RBP17.02■□□□□ 0.31
NUP54-217ENST00000514987 UBAP1LF5GYI3 381 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms