RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 NPLOC4Q8TAT6 608 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 LPAR1Q92633 364 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 APBA2Q99767 749 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 PLXNA1Q9UIW2 1896 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 BDP1A6H8Y1 2624 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 DNM1LO00429 736 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 DNAJB2P25686 324 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 RGS2P41220 211 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 ERVK-9P63128 1117 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 ERVK-24P63145 666 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 EXOSC9Q06265 439 aaKnown RBP13.22□□□□□ -0.29
NEDD9-215ENST00000514660 ADGRE1Q14246 886 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 PDE3AQ14432 1141 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 SLC4A10Q6U841 1118 aa13.22□□□□□ -0.29
NEDD9-215ENST00000514660 OSBPL5Q9H0X9 879 aaPredicted RBP13.22□□□□□ -0.29
NEDD9-215ENST00000514660 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.22□□□□□ -0.29
NEDD9-215ENST00000514660 USP17L5A8MUK1 530 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 CYP2C19P33261 490 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 BTDP43251 543 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 MAP2K5Q13163 448 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 PLEKHH3Q7Z736 793 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 TRMT44Q8IYL2 757 aaKnown RBP13.21□□□□□ -0.29
NEDD9-215ENST00000514660 ATXN2LQ8WWM7 1075 aaKnown RBP13.21□□□□□ -0.29
NEDD9-215ENST00000514660 RNPC3Q96LT9 517 aaKnown RBP13.21□□□□□ -0.29
NEDD9-215ENST00000514660 UHRF1Q96T88 793 aaPredicted RBP13.21□□□□□ -0.29
NEDD9-215ENST00000514660 ZNF576Q9H609 170 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 PRKAG2Q9UGJ0 569 aa13.21□□□□□ -0.29
NEDD9-215ENST00000514660 REV3LO60673 3130 aa13.21□□□□□ -0.3
NEDD9-215ENST00000514660 SMCHD1A6NHR9 2005 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 GRXCR1A8MXD5 290 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 ADORA1P30542 326 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 MAPK4P31152 587 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 PBX2P40425 430 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 IRX3P78415 501 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-215ENST00000514660 PABPC4Q13310 644 aaKnown RBP eCLIP13.2□□□□□ -0.3
NEDD9-215ENST00000514660 CCDC184Q52MB2 194 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 LPIN2Q92539 896 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 FAM163AQ96GL9 167 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-215ENST00000514660 PAGR1Q9BTK6 254 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 SRCIN1Q9C0H9 1055 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 DNAJC18Q9H819 358 aa13.2□□□□□ -0.3
NEDD9-215ENST00000514660 EYA2O00167 538 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 CYBAP13498 195 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 SLC5A1P13866 664 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 CNGA1P29973 690 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 BACE1P56817 501 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 TLE2Q04725 743 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 DDX10Q13206 875 aaKnown RBP13.19□□□□□ -0.3
NEDD9-215ENST00000514660 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 FERMT2Q96AC1 680 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 EDC3Q96F86 508 aaKnown RBP13.19□□□□□ -0.3
NEDD9-215ENST00000514660 WDR18Q9BV38 432 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 EPHX3Q9H6B9 360 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 EMILIN3Q9NT22 766 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 THEGQ9P2T0 379 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 CHD9Q3L8U1 2897 aa13.19□□□□□ -0.3
NEDD9-215ENST00000514660 GPR75-ASB3A0A0A6YYF3 556 aa13.18□□□□□ -0.3
NEDD9-215ENST00000514660 CCDC85BQ15834 202 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-215ENST00000514660 LRFN3Q9BTN0 628 aa13.18□□□□□ -0.3
NEDD9-215ENST00000514660 PRDM12Q9H4Q4 367 aa13.18□□□□□ -0.3
NEDD9-215ENST00000514660 MROH7-TTC4A0A0A0MT08 1334 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 IL16Q14005 1332 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 GBF1Q92538 1859 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 CDK5RAP2Q96SN8 1893 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 BMP1P13497 986 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 PTPREP23469 700 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 ADCYAP1R1P41586 468 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 RASGRF1Q13972 1273 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 MFSD14CQ5VZR4 134 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 C11orf16Q9NQ32 467 aa13.17□□□□□ -0.3
NEDD9-215ENST00000514660 HOXC6P09630 235 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 MRPS5P82675 430 aaKnown RBP13.16□□□□□ -0.3
NEDD9-215ENST00000514660 MECOMQ03112 1051 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 ATP2B3Q16720 1220 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 PRAMEF19Q5SWL8 479 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 C16orf59Q7L2K0 433 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 KHSRPQ92945 711 aaKnown RBP eCLIP13.16□□□□□ -0.3
NEDD9-215ENST00000514660 TIFAQ96CG3 184 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 USP44Q9H0E7 712 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 BTBD7Q9P203 1132 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 DENND2AQ9ULE3 1009 aa13.16□□□□□ -0.3
NEDD9-215ENST00000514660 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-215ENST00000514660 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-215ENST00000514660 KIAA0355O15063 1070 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 TFF2Q03403 129 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 GRB14Q14449 540 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 LRRC41Q15345 812 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 AKNAD1Q5T1N1 836 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 CCDC102BQ68D86 513 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 PBX4Q9BYU1 374 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 TBC1D2Q9BYX2 928 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 PRKRIP1Q9H875 184 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-215ENST00000514660 ABCF2Q9UG63 623 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-215ENST00000514660 CHD7Q9P2D1 2997 aa13.15□□□□□ -0.3
NEDD9-215ENST00000514660 SLC15A5A6NIM6 579 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 MSCO60682 206 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 GDF11O95390 407 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 ATP2B2Q01814 1243 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 FAM47AQ5JRC9 791 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms