RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SLC4A8Q2Y0W8 1093 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 CLEC17AQ6ZS10 378 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 ZNF654Q8IZM8 581 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 FANCBQ8NB91 859 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 RGS22Q8NE09 1264 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 FAM151AQ8WW52 585 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 KAT14Q9H8E8 782 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 MYOZ2Q9NPC6 264 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 FAM198AQ9UFP1 575 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 KIAA1551Q9HCM1 1747 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 UTRNP46939 3433 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 SMIM22K7EJ46 135 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 DDAH1O94760 285 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 ZSCAN22P10073 491 aaPredicted RBP18.67■□□□□ 0.58
NUP54-214ENST00000514307 GABPAQ06546 454 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 ST3GAL1Q11201 340 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 NFIAQ12857 509 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 NFKBIBQ15653 356 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 NSUN7Q8NE18 718 aaKnown RBP18.67■□□□□ 0.58
NUP54-214ENST00000514307 WASF1Q92558 559 aa18.67■□□□□ 0.58
NUP54-214ENST00000514307 NCOA5Q9HCD5 579 aaKnown RBP18.67■□□□□ 0.58
NUP54-214ENST00000514307 RBM28Q9NW13 759 aaKnown RBP18.67■□□□□ 0.58
NUP54-214ENST00000514307 CNOT7Q9UIV1 285 aaKnown RBP18.67■□□□□ 0.58
NUP54-214ENST00000514307 CHD4Q14839 1912 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 MYH2Q9UKX2 1941 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 PTPDC1A2A3K4 754 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 H3BQV1 296 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 GMPSP49915 693 aaPredicted RBP18.66■□□□□ 0.58
NUP54-214ENST00000514307 RTN1Q16799 776 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 SPDYE2Q495Y8 402 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 IFFO2Q5TF58 517 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 FAM83AQ86UY5 434 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 NKX2-3Q8TAU0 364 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 MAP3K14Q99558 947 aa18.66■□□□□ 0.58
NUP54-214ENST00000514307 GOLGB1Q14789 3259 aaKnown RBP18.66■□□□□ 0.58
NUP54-214ENST00000514307 KIF5BP33176 963 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 ADD1P35611 737 aaKnown RBP18.65■□□□□ 0.58
NUP54-214ENST00000514307 GNAQP50148 359 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 SSRP1Q08945 709 aaKnown RBP18.65■□□□□ 0.58
NUP54-214ENST00000514307 MICU3Q86XE3 530 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 TRIM22Q8IYM9 498 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 GPC2Q8N158 579 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 NUP133Q8WUM0 1156 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 DDX11Q96FC9 970 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 ZBED3Q96IU2 234 aaPredicted RBP18.65■□□□□ 0.58
NUP54-214ENST00000514307 SENP2Q9HC62 589 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 PCDHAC2Q9Y5I4 1007 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 TIAM2Q8IVF5 1701 aa18.65■□□□□ 0.58
NUP54-214ENST00000514307 TCP10L2B9ZVM9 353 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 CTDNEP1O95476 244 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 CACNB3P54284 484 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 AKAP17AQ02040 695 aaKnown RBP18.64■□□□□ 0.57
NUP54-214ENST00000514307 EVX2Q03828 476 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 TNFAIP1Q13829 316 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 METTL16Q86W50 562 aaKnown RBP18.64■□□□□ 0.57
NUP54-214ENST00000514307 ZFPM1Q8IX07 1006 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 CTCFLQ8NI51 663 aaPredicted RBP18.64■□□□□ 0.57
NUP54-214ENST00000514307 ORC3Q9UBD5 711 aaPredicted RBP18.64■□□□□ 0.57
NUP54-214ENST00000514307 HERC5Q9UII4 1024 aaKnown RBP18.64■□□□□ 0.57
NUP54-214ENST00000514307 ZDHHC9Q9Y397 364 aa18.64■□□□□ 0.57
NUP54-214ENST00000514307 GRIN3BO60391 1043 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 JAK2O60674 1132 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 TOP1P11387 765 aaKnown RBP18.63■□□□□ 0.57
NUP54-214ENST00000514307 IFNAR1P17181 557 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 MCM4P33991 863 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 RBM26Q5T8P6 1007 aaKnown RBP18.63■□□□□ 0.57
NUP54-214ENST00000514307 SLC44A5Q8NCS7 719 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 IL17RBQ9NRM6 502 aa18.63■□□□□ 0.57
NUP54-214ENST00000514307 CLRN2A0PK11 232 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 VPS37CA5D8V6 355 aaPredicted RBP18.62■□□□□ 0.57
NUP54-214ENST00000514307 DDTLA6NHG4 134 aaPredicted RBP18.62■□□□□ 0.57
NUP54-214ENST00000514307 DDX11L8A8MPP1 907 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 WNT10BO00744 389 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 PRELPP51888 382 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 CERKLQ49MI3 558 aaPredicted RBP18.62■□□□□ 0.57
NUP54-214ENST00000514307 MICALL2Q8IY33 904 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 CSRNP1Q96S65 589 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 LZTS2Q9BRK4 669 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 ZSCAN16Q9H4T2 348 aaPredicted RBP18.62■□□□□ 0.57
NUP54-214ENST00000514307 VEZTQ9HBM0 779 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 STX8Q9UNK0 236 aa18.62■□□□□ 0.57
NUP54-214ENST00000514307 NID2Q14112 1375 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 ATRNL1Q5VV63 1379 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 TBC1D12O60347 775 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 NMT2O60551 498 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 BAG4O95429 457 aaKnown RBP18.61■□□□□ 0.57
NUP54-214ENST00000514307 CDC27P30260 824 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 TROAPQ12815 778 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 PKP1Q13835 747 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 TRIM29Q14134 588 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 GPR162Q16538 588 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 RCSD1Q6JBY9 416 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 DPY19L2Q6NUT2 758 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 TATDN1Q6P1N9 297 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 CCDC144CPQ8IYA2 1237 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 PNMA1Q8ND90 353 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 CABP5Q9NP86 173 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 FAM217BQ9NTX9 383 aaPredicted RBP18.61■□□□□ 0.57
NUP54-214ENST00000514307 MTMR6Q9Y217 621 aa18.61■□□□□ 0.57
NUP54-214ENST00000514307 LAMA4Q16363 1823 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms