RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PORCNQ9H237 461 aa25.09■■□□□ 1.61
SQSTM1-215ENST00000514093 PI4KBQ9UBF8 816 aa25.09■■□□□ 1.61
SQSTM1-215ENST00000514093 SRGAP3O43295 1099 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 GORABQ5T7V8 394 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 CCAR1Q8IX12 1150 aaKnown RBP25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 CDCA7LQ96GN5 454 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 FAM161BQ96MY7 647 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 PAGR1Q9BTK6 254 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 HDAC5Q9UQL6 1122 aa25.08■■□□□ 1.61
SQSTM1-215ENST00000514093 GDF11O95390 407 aa25.07■■□□□ 1.6
SQSTM1-215ENST00000514093 GPR142Q7Z601 462 aa25.07■■□□□ 1.6
SQSTM1-215ENST00000514093 USP6NLQ92738 828 aa25.07■■□□□ 1.6
SQSTM1-215ENST00000514093 ASNSP08243 561 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 MAPK4P31152 587 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 RGS2P41220 211 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 ERVK-9P63128 1117 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 ERVK-24P63145 666 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 POTEEQ6S8J3 1075 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.06■■□□□ 1.63e-7■■■□□ 14.7
SQSTM1-215ENST00000514093 TRMT44Q8IYL2 757 aaKnown RBP25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 DNAJC18Q9H819 358 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 AATFQ9NY61 560 aaKnown RBP eCLIP25.06■■□□□ 1.61e-6■□□□□ 10.1
SQSTM1-215ENST00000514093 LRP2BPQ9P2M1 347 aa25.06■■□□□ 1.6
SQSTM1-215ENST00000514093 USP17L10C9JJH3 530 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 MORN1Q5T089 497 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 PLEKHH3Q7Z736 793 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 MAPKAPK5Q8IW41 473 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 GUCD1Q96NT3 240 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 NDUFB9Q9Y6M9 179 aa25.05■■□□□ 1.6
SQSTM1-215ENST00000514093 C19orf81C9J6K1 198 aa25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 POTEB2H3BUK9 544 aa25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 MCAMP43121 646 aa25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 TGFBRAP1Q8WUH2 860 aa25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 NOL10Q9BSC4 688 aaKnown RBP25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 SENP6Q9GZR1 1112 aaPredicted RBP25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 SIPA1L1O43166 1804 aa25.04■■□□□ 1.6
SQSTM1-215ENST00000514093 ARID4AP29374 1257 aaPredicted RBP25.03■■□□□ 1.6
SQSTM1-215ENST00000514093 CRACR2BQ8N4Y2 399 aaPredicted RBP25.03■■□□□ 1.6
SQSTM1-215ENST00000514093 API5Q9BZZ5 524 aaKnown RBP25.03■■□□□ 1.6
SQSTM1-215ENST00000514093 DHX36Q9H2U1 1008 aaKnown RBP25.03■■□□□ 1.6
SQSTM1-215ENST00000514093 PALD1Q9ULE6 856 aa25.03■■□□□ 1.6
SQSTM1-215ENST00000514093 APBA2Q99767 749 aa25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 TRIM34Q9BYJ4 488 aa25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 CWC22Q9HCG8 908 aaKnown RBP25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 SNRKQ9NRH2 765 aa25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 EMILIN3Q9NT22 766 aa25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 ZBTB21Q9ULJ3 1066 aa25.02■■□□□ 1.6
SQSTM1-215ENST00000514093 ATN1P54259 1190 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-215ENST00000514093 NAA16Q6N069 864 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-215ENST00000514093 BAG3O95817 575 aa25■■□□□ 1.59
SQSTM1-215ENST00000514093 ADGRA1Q86SQ6 560 aa25■■□□□ 1.59
SQSTM1-215ENST00000514093 FOXP4Q8IVH2 680 aaPredicted RBP25■■□□□ 1.59
SQSTM1-215ENST00000514093 EDC3Q96F86 508 aaKnown RBP25■■□□□ 1.59
SQSTM1-215ENST00000514093 LBHD1Q9BQE6 289 aaPredicted RBP25■■□□□ 1.59
SQSTM1-215ENST00000514093 FLRT1Q9NZU1 646 aa25■■□□□ 1.59
SQSTM1-215ENST00000514093 SAP30BPQ9UHR5 308 aaKnown RBP25■■□□□ 1.59
SQSTM1-215ENST00000514093 FLT1P17948 1338 aa25■■□□□ 1.59
SQSTM1-215ENST00000514093 LAMA2P24043 3122 aaKnown RBP24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 MAP2K5Q13163 448 aa24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 ZYXQ15942 572 aaKnown RBP24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 WDR78Q5VTH9 848 aa24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 FAM109BQ6ICB4 259 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 DNAH12Q6ZR08 3092 aa24.99■■□□□ 1.59
SQSTM1-215ENST00000514093 CNMDO75829 334 aa24.98■■□□□ 1.59
SQSTM1-215ENST00000514093 USP17L2Q6R6M4 530 aa24.98■■□□□ 1.59
SQSTM1-215ENST00000514093 METTL16Q86W50 562 aaKnown RBP24.98■■□□□ 1.59
SQSTM1-215ENST00000514093 GNAI3P08754 354 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 UQCRFS1P1P0C7P4 283 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 CNGA1P29973 690 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 PPP4CP60510 307 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 MTX1Q13505 466 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 MFSD14CQ5VZR4 134 aa24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 GTF3C2Q8WUA4 911 aaPredicted RBP24.97■■□□□ 1.59
SQSTM1-215ENST00000514093 PLCG2P16885 1265 aa24.96■■□□□ 1.59
SQSTM1-215ENST00000514093 DDX20Q9UHI6 824 aaKnown RBP24.96■■□□□ 1.59
SQSTM1-215ENST00000514093 GH2P01242 217 aa24.95■■□□□ 1.58
SQSTM1-215ENST00000514093 G3BP1Q13283 466 aaKnown RBP eCLIP24.95■■□□□ 1.58
SQSTM1-215ENST00000514093 GINM1Q9NU53 330 aa24.95■■□□□ 1.58
SQSTM1-215ENST00000514093 RABGAP1Q9Y3P9 1069 aa24.95■■□□□ 1.58
SQSTM1-215ENST00000514093 FRMPD3Q5JV73 1810 aa24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 PNMA6EA0A0J9YXQ4 647 aa24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 DYNLL1P63167 89 aaKnown RBP24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 ZNF697Q5TEC3 545 aa24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 TRMT2AQ8IZ69 625 aaKnown RBP24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 NPLOC4Q8TAT6 608 aa24.94■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L15C9J2P7 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L13C9JLJ4 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L11C9JVI0 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L18D6R9N7 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L22D6RA61 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L17D6RBQ6 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L19D6RCP7 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L20D6RJB6 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 GLRX3O76003 335 aaKnown RBP24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 CYP2E1P05181 493 aaPredicted RBP24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 HLA-DOAP06340 250 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 PTPREP23469 700 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 CYP2C19P33261 490 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 RTP1P59025 263 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 CCNA1P78396 465 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms