RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 TICAM2Q86XR7 235 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 RASAL3Q86YV0 1011 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 CLEC10AQ8IUN9 316 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 AMOTL1Q8IY63 956 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 PIP4P2Q8N4L2 257 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 HOOK2Q96ED9 719 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 EHD4Q9H223 541 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 ANO2Q9NQ90 1003 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 INCENPQ9NQS7 918 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 HERC5Q9UII4 1024 aaKnown RBP11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 TACC3Q9Y6A5 838 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 PHIPQ8WWQ0 1821 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 RASSF10A6NK89 507 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 AOC2O75106 756 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 GJA5P36382 358 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 ZNF157P51786 506 aaPredicted RBP11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 MAP3K9P80192 1104 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 SBK1Q52WX2 424 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 RGMBQ6NW40 437 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 CASC1Q6TDU7 716 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 METTL16Q86W50 562 aaKnown RBP11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 TBC1D10CQ8IV04 446 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 ANKRD13AQ8IZ07 590 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 SPDYE1Q8NFV5 336 aaPredicted RBP11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 ZIC5Q96T25 663 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 NBPF3Q9H094 633 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 ZNF112Q9UJU3 913 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 CSADQ9Y600 493 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 TAF6LQ9Y6J9 622 aa11.68□□□□□ -0.54
TOPBP1-209ENST00000513818 TBC1D12O60347 775 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 AKR1B1P15121 316 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 CDK8P49336 464 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 MAP3K10Q02779 954 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 C16orf86Q6ZW13 317 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 FOXP4Q8IVH2 680 aaPredicted RBP11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 SCYL3Q8IZE3 742 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 NKX2-3Q8TAU0 364 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 OPTNQ96CV9 577 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 OTUD5Q96G74 571 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 CAPNS2Q96L46 248 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 DSCC1Q9BVC3 393 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 LSG1Q9H089 658 aaKnown RBP11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 ZBTB21Q9ULJ3 1066 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 RBM8AQ9Y5S9 174 aaKnown RBP11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 THSD7BQ9C0I4 1608 aa11.67□□□□□ -0.54
TOPBP1-209ENST00000513818 ZMYM6O95789 1325 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 NEDD4P46934 1319 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 FAM155AB1AL88 458 aaPredicted RBP11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 MPHOSPH10O00566 681 aaKnown RBP11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 GH2P01242 217 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 SLC10A3P09131 477 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 CAP2P40123 477 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 VEGFBP49765 207 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 DGKZQ13574 1117 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 ALX1Q15699 326 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 DEFB115Q30KQ5 88 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 RRP12Q5JTH9 1297 aaKnown RBP11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 SLC10A4Q96EP9 437 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 WNK4Q96J92 1243 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 PCNTO95613 3336 aa11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 GREB1LQ9C091 1923 aaPredicted RBP11.66□□□□□ -0.54
TOPBP1-209ENST00000513818 SPDYE5A6NIY4 337 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 RASA1P20936 1047 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 CERKLQ49MI3 558 aaPredicted RBP11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 FAM47AQ5JRC9 791 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 NOL9Q5SY16 702 aaKnown RBP11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 TATDN1Q6P1N9 297 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 KIAA1211Q6ZU35 1233 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 MKNK2Q9HBH9 465 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 PICK1Q9NRD5 415 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 TOMM22Q9NS69 142 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 SWAP70Q9UH65 585 aa11.65□□□□□ -0.54
TOPBP1-209ENST00000513818 PTPRFP10586 1907 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 WDR33Q9C0J8 1336 aaKnown RBP11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 ZNF213O14771 459 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 CYP21A2P08686 494 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 PTPRAP18433 802 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 GUCY1A2P33402 732 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 SEPT2Q15019 361 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 RAB3GAP1Q15042 981 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 ABCB5Q2M3G0 1257 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 SPRYD7Q5W111 196 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 MAP4K1Q92918 833 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 ANAPC4Q9UJX5 808 aa11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.64□□□□□ -0.55
TOPBP1-209ENST00000513818 TRIM75PA6NK02 468 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 IRF6O14896 467 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 SLC3A2P08195 630 aaKnown RBP11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.554e-6■■■■□ 23.1
TOPBP1-209ENST00000513818 ZYXQ15942 572 aaKnown RBP11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 IMMTQ16891 758 aaKnown RBP11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 C8orf34Q49A92 452 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 STOX1Q6ZVD7 989 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 ERO1BQ86YB8 467 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 HHIPL1Q96JK4 782 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 ZHX2Q9Y6X8 837 aa11.63□□□□□ -0.55
TOPBP1-209ENST00000513818 B4E1Z4 1266 aa11.62□□□□□ -0.55
TOPBP1-209ENST00000513818 SLC27A2O14975 620 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms