RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	FOSL2	P15408	326 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	TIMM10	P62072	90 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	IRX3	P78415	501 aa	Predicted RBP	13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	SLC39A5	Q6ZMH5	540 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	SH3RF1	Q7Z6J0	888 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	DZIP1	Q86YF9	867 aa	Known RBP	13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	MRPL50	Q8N5N7	158 aa	Known RBP	13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	LPAR1	Q92633	364 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	EDC3	Q96F86	508 aa	Known RBP	13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	CEP126	Q9P2H0	1117 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	DDX20	Q9UHI6	824 aa	Known RBP	13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	NDUFB9	Q9Y6M9	179 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	FRMPD3	Q5JV73	1810 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	ATAD5	Q96QE3	1844 aa		13.94	□□□□□ -0.18
RNF4-218	ENST00000513284	TRIM43B	A6NCK2	446 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	CIAO1	O76071	339 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	ITGB8	P26012	769 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	EPHB4	P54760	987 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	MAP2K5	Q13163	448 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	PDE3A	Q14432	1141 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	GRIN2C	Q14957	1233 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	TJAP1	Q5JTD0	557 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	ZGPAT	Q8N5A5	531 aa	Known RBP	13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	NPLOC4	Q8TAT6	608 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	APBA2	Q99767	749 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	EMILIN3	Q9NT22	766 aa		13.93	□□□□□ -0.18
RNF4-218	ENST00000513284	DNM1L	O00429	736 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	GJC2	Q5T442	439 aa	Predicted RBP	13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	SLF2	Q8IX21	1173 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	PAGR1	Q9BTK6	254 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	DNAJC18	Q9H819	358 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	AS3MT	Q9HBK9	375 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	ATP11B	Q9Y2G3	1177 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	RLF	Q13129	1914 aa		13.92	□□□□□ -0.18
RNF4-218	ENST00000513284	C19orf81	C9J6K1	198 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	PTPRE	P23469	700 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	CYP2C19	P33261	490 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	TBC1D9	Q6ZT07	1266 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	NSUN4	Q96CB9	384 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	TMOD4	Q9NZQ9	345 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	PRKAG2	Q9UGJ0	569 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	HERC5	Q9UII4	1024 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	FBXO3	Q9UK99	471 aa		13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	PA2G4	Q9UQ80	394 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-218	ENST00000513284	PDS5A	Q29RF7	1337 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	USP17L10	C9JJH3	530 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	HOXC6	P09630	235 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	CNGA1	P29973	690 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	SNX17	Q15036	470 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	TRIM60	Q495X7	471 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	MFSD14C	Q5VZR4	134 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	ERICH6	Q7L0X2	663 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	METTL16	Q86W50	562 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	PDLIM7	Q9NR12	457 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	SIPA1L1	O43166	1804 aa		13.9	□□□□□ -0.18
RNF4-218	ENST00000513284	MAP4K4	O95819	1239 aa	Predicted RBP	13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	ASNS	P08243	561 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	PLA2G5	P39877	138 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	ANO1	Q5XXA6	986 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	PI16	Q6UXB8	463 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	HMG20B	Q9P0W2	317 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	PI4KB	Q9UBF8	816 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	RABGAP1	Q9Y3P9	1069 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	CHD9	Q3L8U1	2897 aa		13.89	□□□□□ -0.19
RNF4-218	ENST00000513284	SLC15A5	A6NIM6	579 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	MSC	O60682	206 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	CYBA	P13498	195 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	IL15	P40933	162 aa	Predicted RBP	13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	ATP2B2	Q01814	1243 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	CCAR1	Q8IX12	1150 aa	Known RBP	13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	XAGE2	Q96GT9	111 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	BTBD7	Q9P203	1132 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	REV3L	O60673	3130 aa		13.88	□□□□□ -0.19
RNF4-218	ENST00000513284	TMEM265	A0A087WTH1	108 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	GDF11	O95390	407 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	ADCYAP1R1	P41586	468 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	TLE2	Q04725	743 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	GRB14	Q14449	540 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	TEX11	Q8IYF3	940 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	COPRS	Q9NQ92	184 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284	ZBTB21	Q9ULJ3	1066 aa		13.87	□□□□□ -0.19
RNF4-218	ENST00000513284		A0A1B0GUL7	405 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	LDHC	P07864	332 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	PRAMEF19	Q5SWL8	479 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	C1orf53	Q5VUE5	145 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L2	Q6R6M4	530 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	CATSPERG	Q6ZRH7	1159 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	ARRDC4	Q8NCT1	418 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	SSH1	Q8WYL5	1049 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	FERMT2	Q96AC1	680 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	PTPRC	P08575	1304 aa		13.86	□□□□□ -0.19
RNF4-218	ENST00000513284	HOXD11	P31277	338 aa	Predicted RBP	13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	MAP3K12	Q12852	859 aa		13.85	□□□□□ -0.19

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