RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CGNQ9P2M7 1197 aaKnown RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 FBXO40Q9UH90 709 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ZNF215Q9UL58 517 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 KDM5CP41229 1560 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 TYW5A2RUC4 315 aaKnown RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 FAM193AP78312 1265 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 CHRNDQ07001 517 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GRAPQ13588 217 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 AKNAD1Q5T1N1 836 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GPATCH4Q5T3I0 446 aaKnown RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 CEP135Q66GS9 1140 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 BRINP3Q76B58 766 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PDCL2Q8N4E4 241 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 METTL13Q8N6R0 699 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GOLGA5Q8TBA6 731 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GRAPLQ8TC17 118 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 SLC16A10Q8TF71 515 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 LRRC2Q9BYS8 371 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 STMN4Q9H169 189 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 LRWD1Q9UFC0 647 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ADGRL2O95490 1459 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 OVOS2A0A0G2JMS6 1433 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 OVOS2A0A0J9YW53 1432 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 OVOS2Q6IE36 1432 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PLXNC1O60486 1568 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 RNF123Q5XPI4 1314 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ZNF532Q9HCE3 1301 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 NEURL1BA8MQ27 555 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GIGYF1O75420 1035 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 OATP04181 439 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 TNFAIP3P21580 790 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 MFSD14CQ5VZR4 134 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 IPO4Q8TEX9 1081 aaKnown RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 SUCLG2Q96I99 432 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 NACC1Q96RE7 527 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ATP6V0A2Q9Y487 856 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ATP10DQ9P241 1426 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 BIN1O00499 593 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 APOBRQ0VD83 1088 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 EXOC4Q96A65 974 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PHACTR3Q96KR7 559 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ABCA8O94911 1581 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 UQCRHLA0A096LP55 91 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 TRAF5O00463 557 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 TLR3O15455 904 aaKnown RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 CCNT1O60563 726 aaKnown RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 SCNN1DP51172 638 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 UBXN2AP68543 259 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 KIAA1841Q6NSI8 718 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 SND1Q7KZF4 910 aaKnown RBP eCLIP4.74□□□□□ -1.658e-7■■■■■ 29.8
VCAN-209ENST00000513016 GTF3C6Q969F1 213 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ZNF594Q96JF6 807 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 MED10Q9BTT4 135 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ZNF277Q9NRM2 450 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 PCDHB13Q9Y5F0 798 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 V9GY48 417 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 DDX39AO00148 427 aaKnown RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 KRT10P13645 584 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 PTPREP23469 700 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ELF1P32519 619 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 TXKP42681 527 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CALCRLQ16602 461 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 NECAB1Q8N987 351 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 SNX29Q8TEQ0 813 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CCT6BQ92526 530 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CSRNP1Q96S65 589 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ZKSCAN3Q9BRR0 538 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CACYBPQ9HB71 228 aaKnown RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 ATP8B3O60423 1300 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 URI1O94763 535 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 USP17L8P0C7I0 530 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ECE1P42892 770 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ZAP70P43403 619 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ZNF449Q6P9G9 518 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 RUFY3Q7L099 469 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 TMC6Q7Z403 805 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CCDC50Q8IVM0 306 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 CCDC102AQ96A19 550 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 KANSL2Q9H9L4 492 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 SAMD9Q5K651 1589 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 GOLGA6CA6NDK9 693 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 GOLGA6BA6NDN3 693 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 GOLGA6DP0CG33 693 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 DNA2P51530 1060 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 PPARAQ07869 468 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 C6orf163Q5TEZ5 329 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 PDZD4Q76G19 769 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 REXO1Q8N1G1 1221 aaKnown RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 MYCT1Q8N699 235 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 GOLGA6AQ9NYA3 693 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 AGTPBP1Q9UPW5 1226 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 KRT19P08727 400 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ATP5JP18859 108 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 UBASH3AP57075 661 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 ATP6V0A1Q93050 837 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 LBHD1Q9BQE6 289 aaPredicted RBP4.74□□□□□ -1.65
VCAN-209ENST00000513016 DSCC1Q9BVC3 393 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 GPR108Q9NPR9 543 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 PALLDQ8WX93 1383 aa4.74□□□□□ -1.65
VCAN-209ENST00000513016 FAM135BQ49AJ0 1406 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms