RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 STAMBPL1Q96FJ0 436 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 KCNA4P22459 653 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 ARHGEF18Q6ZSZ5 1173 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 ANKRD35Q8N283 1001 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 ZNF215Q9UL58 517 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 PTPRGP23470 1445 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 SERPINI2O75830 405 aa12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 BCRP11274 1271 aa12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 TRHP20396 242 aaPredicted RBP12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 CCDC125Q86Z20 511 aa12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 APLFQ8IW19 511 aaPredicted RBP12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 CDC5LQ99459 802 aaKnown RBP12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 COPG1Q9Y678 874 aaKnown RBP12.4□□□□□ -0.43
LIMCH1-217ENST00000512946 PTPDC1A2A3K4 754 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 MCM10Q7L590 875 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 TADA2BQ86TJ2 420 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 KLHL7Q8IXQ5 586 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 UIMC1Q96RL1 719 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 EXOC7Q9UPT5 735 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 CSGALNACT2Q8N6G5 542 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 TMEM87AQ8NBN3 555 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 SLC52A1Q9NWF4 448 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 CDC23Q9UJX2 597 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 RTEL1-TNFRSF6BF6WH68 1400 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 IGHDP01880 384 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 RPSAP08865 295 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 EIF3BP55884 814 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 IFT88Q13099 833 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 TRIML1Q8N9V2 468 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 PIP4K2CQ8TBX8 421 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 IFIH1Q9BYX4 1025 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 VPS37BQ9H9H4 285 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 ANKFY1Q9P2R3 1169 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 STOML1Q9UBI4 398 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 KCNH3Q9ULD8 1083 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 CDC25BP30305 580 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 AK2P54819 239 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 TMTC3Q6ZXV5 915 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 MAP7D3Q8IWC1 876 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 ANKRD42Q8N9B4 389 aa12.39□□□□□ -0.43
LIMCH1-217ENST00000512946 NUTM2BA6NNL0 878 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 NUTM2EB1AL46 878 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 EIF3CLB5ME19 914 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 KIF11P52732 1056 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 SFMBT2Q5VUG0 894 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 OGFOD1Q8N543 542 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 FBXO18Q8NFZ0 1043 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 EIF3CQ99613 913 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 DKC1O60832 514 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 CCT6AP40227 531 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 NAPAP54920 295 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 KLHL30Q0D2K2 578 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 CEP19Q96LK0 163 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 CDK19Q9BWU1 502 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 CCDC141Q6ZP82 1450 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 GARSP41250 739 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 TEDDM1Q5T9Z0 273 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 ANO1Q5XXA6 986 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 TRIML2Q8N7C3 387 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 VTI1AQ96AJ9 217 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 PALM2Q8IXS6 379 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 CNPY4Q8N129 248 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 OSBPL9Q96SU4 736 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 HAUS7Q99871 368 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 MRPL46Q9H2W6 279 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 MRPL40Q9NQ50 206 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 DIABLOQ9NR28 239 aa12.38□□□□□ -0.43
LIMCH1-217ENST00000512946 ZMYM3Q14202 1370 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 CASKIN1Q8WXD9 1431 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 CHGBP05060 677 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 HSPA6P17066 643 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 PPP1R42Q7Z4L9 355 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 MYD88Q99836 296 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 FAM96AQ9H5X1 160 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 PHLPP2Q6ZVD8 1323 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 PFDN6O15212 129 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 SESN3P58005 492 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 HAUS3Q68CZ6 603 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 TCP11Q8WWU5 503 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 MID2Q9UJV3 735 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 NSD3Q9BZ95 1437 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 TBC1D8O95759 1140 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 PRAM1Q96QH2 718 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 KRT12Q99456 494 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 PALMDQ9NP74 551 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 NFE2L3Q9Y4A8 694 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 MRFAP1Q9Y605 127 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 MYO1CO00159 1063 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 RASA3Q14644 834 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 LONRF2Q1L5Z9 754 aa12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 SOS1Q07889 1333 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-217ENST00000512946 ERICH3Q5RHP9 1530 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 HDAC4P56524 1084 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 ATP8B2P98198 1209 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 SCYL3Q8IZE3 742 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 VPS16Q9H269 839 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 PDE11AQ9HCR9 933 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 CABP1Q9NZU7 370 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 AOX1Q06278 1338 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms