RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NELFBQ8WX92 580 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 LRRC27Q9C0I9 530 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 MED23Q9ULK4 1368 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 ERBB3P21860 1342 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 CTSWP56202 376 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 IQCB1Q15051 598 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 CCDC51Q96ER9 411 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 OSBPL5Q9H0X9 879 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 IFFO1Q0D2I5 559 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 SPATA1Q5VX52 437 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 RABGGTAQ92696 567 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 MROH5Q6ZUA9 1318 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 H7C1W4 665 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 PPP1R12BO60237 982 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 ZSCAN26Q16670 478 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 KMT5BQ4FZB7 885 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 TCERG1LQ5VWI1 586 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 STOX1Q6ZVD7 989 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 PHKA1P46020 1223 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 TERF2Q15554 542 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 FAM76AQ8TAV0 307 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 AFAP1L1Q8TED9 768 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 JAKMIP2Q96AA8 810 aa9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 NOC4LQ9BVI4 516 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-216ENST00000512820 PXDNLA1KZ92 1463 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 EBAG9O00559 213 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 PPARAQ07869 468 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ZSCAN29Q8IWY8 852 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 CSGALNACT2Q8N6G5 542 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ACSBG1Q96GR2 724 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 C6orf50Q9HD87 102 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ATG3Q9NT62 314 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 SH2B2O14492 632 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 CHGBP05060 677 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 DNAJC21Q5F1R6 531 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 GRAMD1CQ8IYS0 662 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ZNF710Q8N1W2 664 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 FUCA2Q9BTY2 467 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 GREM2Q9H772 168 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 MAN1B1Q9UKM7 699 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ANKARQ7Z5J8 1434 aa9.46□□□□□ -0.89
LIMCH1-216ENST00000512820 ADD2P35612 726 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 PDE4DQ08499 809 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 ANKRD7Q92527 254 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 CSRNP2Q9H175 543 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 SHPRHQ149N8 1683 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 DIP2CQ9Y2E4 1556 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 NCAPD2Q15021 1401 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 ATP8B1O43520 1251 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 ADAMTS2O95450 1211 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 WHAMMP3Q1A5X7 153 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 USPL1Q5W0Q7 1092 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 MICALL1Q8N3F8 863 aa9.46□□□□□ -0.9
LIMCH1-216ENST00000512820 ERCC5P28715 1186 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 ARID5AQ03989 594 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 SPAG5Q96R06 1193 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 TSGA10Q9BZW7 698 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 DENND2AQ9ULE3 1009 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 RFX7Q2KHR2 1363 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 AP5Z1O43299 807 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 PDE8BO95263 885 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 FMNL1O95466 1100 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 PNMA6AP0CW24 399 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 LETM2Q2VYF4 491 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 BPIFA3Q9BQP9 254 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 FOXP1Q9H334 677 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 SAMSN1Q9NSI8 373 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 CDC23Q9UJX2 597 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 JAG2Q9Y219 1238 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 VAV2P52735 878 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 RBM5P52756 815 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 GSTO1P78417 241 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 SRGAP1Q7Z6B7 1085 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 NBPF5PQ86XG9 351 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 ENOX1Q8TC92 643 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 SYMPKQ92797 1274 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 GOPCQ9HD26 462 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 TNKSO95271 1327 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 PPLO60437 1756 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 KCNJ18B7U540 433 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 CASP14P31944 242 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 MORC3Q14149 939 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 KCNJ12Q14500 433 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 TTC31Q49AM3 519 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 TICAM2Q86XR7 235 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 OR8K1Q8NGG5 319 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 KCNB2Q92953 911 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 NLRP3Q96P20 1036 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 AXIN2Q9Y2T1 843 aa9.45□□□□□ -0.9
LIMCH1-216ENST00000512820 CTIFO43310 598 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 MNAT1P51948 309 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 EXOSC10Q01780 885 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 IFT81Q8WYA0 676 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 MORC2Q9Y6X9 1032 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 ADGRL3Q9HAR2 1447 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 IBSPP21815 317 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 GNA11P29992 359 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 RBL2Q08999 1139 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 NR5A1Q13285 461 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PRPF4BQ13523 1007 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms