RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 PCDHB5Q9Y5E4 795 aa12.1□□□□□ -0.47
USP53-206ENST00000510737 GNAT3A8MTJ3 354 aa12.09□□□□□ -0.47
USP53-206ENST00000510737 CLCN7P51798 805 aa12.09□□□□□ -0.47
USP53-206ENST00000510737 WIPI1Q5MNZ9 446 aaPredicted RBP12.09□□□□□ -0.47
USP53-206ENST00000510737 TMEM40Q8WWA1 233 aa12.09□□□□□ -0.47
USP53-206ENST00000510737 HSPA12BQ96MM6 686 aa12.09□□□□□ -0.47
USP53-206ENST00000510737 CTNND2Q9UQB3 1225 aa12.09□□□□□ -0.47
USP53-206ENST00000510737 CAP2P40123 477 aa12.08□□□□□ -0.48
USP53-206ENST00000510737 HDXQ7Z353 690 aa12.08□□□□□ -0.48
USP53-206ENST00000510737 MIPEPQ99797 713 aa12.08□□□□□ -0.48
USP53-206ENST00000510737 ZNF503-AS2A6NEH8 195 aa12.07□□□□□ -0.48
USP53-206ENST00000510737 GNA15P30679 374 aa12.07□□□□□ -0.48
USP53-206ENST00000510737 SEPT6Q14141 434 aa12.07□□□□□ -0.48
USP53-206ENST00000510737 FYB2Q5VWT5 728 aa12.07□□□□□ -0.48
USP53-206ENST00000510737 ATP13A1Q9HD20 1204 aa12.07□□□□□ -0.48
USP53-206ENST00000510737 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.06□□□□□ -0.48
USP53-206ENST00000510737 GFRA2O00451 464 aa12.06□□□□□ -0.48
USP53-206ENST00000510737 SNCAIPQ9Y6H5 919 aa12.06□□□□□ -0.48
USP53-206ENST00000510737 WDR62O43379 1518 aa12.06□□□□□ -0.48
USP53-206ENST00000510737 ZNF865P0CJ78 1059 aaPredicted RBP12.05□□□□□ -0.48
USP53-206ENST00000510737 FGD1P98174 961 aa12.05□□□□□ -0.48
USP53-206ENST00000510737 MESP2Q0VG99 397 aa12.05□□□□□ -0.48
USP53-206ENST00000510737 LCE1DQ5T752 114 aa12.05□□□□□ -0.48
USP53-206ENST00000510737 C22orf34Q6ZV56 151 aa12.05□□□□□ -0.48
USP53-206ENST00000510737 C19orf73Q9NVV2 129 aa12.05□□□□□ -0.48
USP53-206ENST00000510737 TPX2Q9ULW0 747 aaKnown RBP12.05□□□□□ -0.48
USP53-206ENST00000510737 PDS5BQ9NTI5 1447 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 FARP2O94887 1054 aaPredicted RBP12.04□□□□□ -0.48
USP53-206ENST00000510737 EIF4BP23588 611 aaKnown RBP12.04□□□□□ -0.48
USP53-206ENST00000510737 GRK4P32298 578 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 ETF1P62495 437 aaKnown RBP12.04□□□□□ -0.48
USP53-206ENST00000510737 CDKAL1Q5VV42 579 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 PRAMEF13Q5VWM6 474 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 ZSWIM9Q86XI8 627 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 FRMD6Q96NE9 622 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 CARS2Q9HA77 564 aaKnown RBP12.04□□□□□ -0.48
USP53-206ENST00000510737 ST14Q9Y5Y6 855 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 CAPN6Q9Y6Q1 641 aa12.04□□□□□ -0.48
USP53-206ENST00000510737 CCDC85BQ15834 202 aaPredicted RBP12.03□□□□□ -0.48
USP53-206ENST00000510737 SFRP5Q5T4F7 317 aa12.03□□□□□ -0.48
USP53-206ENST00000510737 LETMD1Q6P1Q0 360 aa12.03□□□□□ -0.48
USP53-206ENST00000510737 HID1Q8IV36 788 aa12.03□□□□□ -0.48
USP53-206ENST00000510737 MFSD4AQ8N468 514 aa12.03□□□□□ -0.48
USP53-206ENST00000510737 XAGE3Q8WTP9 111 aa12.03□□□□□ -0.48
USP53-206ENST00000510737 MRC2Q9UBG0 1479 aa12.02□□□□□ -0.48
USP53-206ENST00000510737 PRPF40AO75400 957 aaKnown RBP12.02□□□□□ -0.49
USP53-206ENST00000510737 MFSD2AQ8NA29 543 aa12.02□□□□□ -0.49
USP53-206ENST00000510737 DUSP9Q99956 384 aaKnown RBP12.02□□□□□ -0.49
USP53-206ENST00000510737 LMCD1Q9NZU5 365 aa12.02□□□□□ -0.49
USP53-206ENST00000510737 AK5Q9Y6K8 562 aa12.02□□□□□ -0.49
USP53-206ENST00000510737 FAM155AB1AL88 458 aaPredicted RBP12.01□□□□□ -0.49
USP53-206ENST00000510737 H3BS24 57 aa12.01□□□□□ -0.49
USP53-206ENST00000510737 CST3P01034 146 aaPredicted RBP12.01□□□□□ -0.49
USP53-206ENST00000510737 RPS26P62854 115 aaKnown RBP12.01□□□□□ -0.49
USP53-206ENST00000510737 MAP3K11Q16584 847 aa12.01□□□□□ -0.49
USP53-206ENST00000510737 TRAIPQ9BWF2 469 aa12.01□□□□□ -0.49
USP53-206ENST00000510737 MEI1Q5TIA1 1274 aa12□□□□□ -0.49
USP53-206ENST00000510737 AGMOQ6ZNB7 445 aa12□□□□□ -0.49
USP53-206ENST00000510737 LIN37Q96GY3 246 aaPredicted RBP12□□□□□ -0.49
USP53-206ENST00000510737 ARHGEF11O15085 1522 aa12□□□□□ -0.49
USP53-206ENST00000510737 KCNMB1Q16558 191 aa11.99□□□□□ -0.49
USP53-206ENST00000510737 DPH2Q9BQC3 489 aaPredicted RBP11.99□□□□□ -0.49
USP53-206ENST00000510737 TJP2Q9UDY2 1190 aa11.99□□□□□ -0.49
USP53-206ENST00000510737 CBX7O95931 251 aa11.98□□□□□ -0.49
USP53-206ENST00000510737 TFE3P19532 575 aaPredicted RBP11.98□□□□□ -0.49
USP53-206ENST00000510737 LIG3P49916 1009 aa11.98□□□□□ -0.49
USP53-206ENST00000510737 LRRC10BA6NIK2 292 aa11.97□□□□□ -0.49
USP53-206ENST00000510737 CDH24Q86UP0 819 aa11.97□□□□□ -0.49
USP53-206ENST00000510737 SMARCA4P51532 1647 aa11.97□□□□□ -0.49
USP53-206ENST00000510737 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.49
USP53-206ENST00000510737 DBX1A6NMT0 343 aa11.96□□□□□ -0.49
USP53-206ENST00000510737 MLANAQ16655 118 aa11.96□□□□□ -0.49
USP53-206ENST00000510737 ANKRD33BA6NCL7 494 aa11.95□□□□□ -0.5
USP53-206ENST00000510737 TNK2Q07912 1038 aa11.95□□□□□ -0.5
USP53-206ENST00000510737 LCE4AQ5TA78 99 aa11.95□□□□□ -0.5
USP53-206ENST00000510737 CYB5RLQ6IPT4 315 aa11.95□□□□□ -0.5
USP53-206ENST00000510737 NPAS4Q8IUM7 802 aa11.95□□□□□ -0.5
USP53-206ENST00000510737 WASH4PA8MWX3 477 aa11.94□□□□□ -0.5
USP53-206ENST00000510737 CILP2Q8IUL8 1156 aa11.94□□□□□ -0.5
USP53-206ENST00000510737 KSR1Q8IVT5 923 aa11.94□□□□□ -0.5
USP53-206ENST00000510737 MRPL41Q8IXM3 137 aaKnown RBP11.94□□□□□ -0.5
USP53-206ENST00000510737 UBE2FQ969M7 185 aa11.94□□□□□ -0.5
USP53-206ENST00000510737 TLR6Q9Y2C9 796 aa11.94□□□□□ -0.5
USP53-206ENST00000510737 AFMP43652 599 aa11.93□□□□□ -0.5
USP53-206ENST00000510737 KRTAP4-7Q9BYR0 210 aa11.93□□□□□ -0.5
USP53-206ENST00000510737 TACC3Q9Y6A5 838 aa11.93□□□□□ -0.5
USP53-206ENST00000510737 PGRP06401 933 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 THAP5Q7Z6K1 395 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 KIRREL1Q96J84 757 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 TMEM87BQ96K49 555 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 FAM84AQ96KN4 292 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 ZSWIM5Q9P217 1185 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 CADPSQ9ULU8 1353 aa11.92□□□□□ -0.5
USP53-206ENST00000510737 GDNFP39905 211 aa11.91□□□□□ -0.5
USP53-206ENST00000510737 EAPPQ56P03 285 aaPredicted RBP11.91□□□□□ -0.5
USP53-206ENST00000510737 PRR23BQ6ZRT6 265 aa11.91□□□□□ -0.5
USP53-206ENST00000510737 DNAJB8Q8NHS0 232 aa11.91□□□□□ -0.5
USP53-206ENST00000510737 Q96M66 194 aa11.91□□□□□ -0.5
USP53-206ENST00000510737 MIR1-1HGQ9H1L0 117 aa11.91□□□□□ -0.5
USP53-206ENST00000510737 GLI1P08151 1106 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms