RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SEC23AQ15436 765 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CFAP100Q494V2 611 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 JAKMIP3Q5VZ66 844 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 DIS3L2Q8IYB7 885 aaKnown RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 PHKBQ93100 1093 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 MED15Q96RN5 788 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 ARID3AQ99856 593 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 BAG1Q99933 345 aaPredicted RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 STRN4Q9NRL3 753 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CNNM1Q9NRU3 951 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 RGL2O15211 777 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 PNMA6AP0CW24 399 aaPredicted RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 SART3Q15020 963 aaKnown RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 HLFQ16534 295 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 RTN1Q16799 776 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 RABGGTAQ92696 567 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CLIC6Q96NY7 704 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 LAMB1P07942 1786 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 MAST2Q6P0Q8 1798 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 ZNF804BA4D1E1 1349 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 ROBO1Q9Y6N7 1651 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 IFIT3O14879 490 aaKnown RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 FUT2Q10981 343 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CUL4BQ13620 913 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 MICU3Q86XE3 530 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 UBXN4Q92575 508 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 SMARCE1Q969G3 411 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 FERMT2Q96AC1 680 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CCDC34Q96HJ3 373 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 PYM1Q9BRP8 204 aaKnown RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 NACAP1Q9BZK3 213 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 NAPBQ9H115 298 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 LRRC10BA6NIK2 292 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 TMEM232C9JQI7 657 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 PLA2G4AP47712 749 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 FMR1Q06787 632 aaKnown RBP eCLIP10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 ARHGAP29Q52LW3 1261 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 MFSD6Q6ZSS7 791 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 SLC26A6Q9BXS9 759 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 RAI14Q9P0K7 980 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 PDS5AQ29RF7 1337 aaKnown RBP10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 MYH2Q9UKX2 1941 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 PPFIA3O75145 1194 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 GNL2Q13823 731 aaKnown RBP10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 RASGRF1Q13972 1273 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 SPATA1Q5VX52 437 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 LRRN4CLQ8ND94 238 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 HNRNPLLQ8WVV9 542 aaKnown RBP10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 TNFRSF25Q93038 417 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 GSDMAQ96QA5 445 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 PHF20Q9BVI0 1012 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 NFE2L3Q9Y4A8 694 aa10.55□□□□□ -0.72
PDGFRA-208ENST00000509490 BTBD18B2RXH4 712 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 PRPF3O43395 683 aaKnown RBP10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 IDH1O75874 414 aaKnown RBP10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 MBD4O95243 580 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 CYP2C19P33261 490 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 WTAPQ15007 396 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 NFXL1Q6ZNB6 911 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 FANCBQ8NB91 859 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 CTAGE1Q96RT6 745 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 UTP14AQ9BVJ6 771 aaKnown RBP10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 RNF216Q9NWF9 866 aaPredicted RBP10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 ASAP1Q9ULH1 1129 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 CCDC66A2RUB6 948 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 TMCO3Q6UWJ1 677 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 HOMER1Q86YM7 354 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 SLC4A9Q96Q91 983 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 SERTAD1Q9UHV2 236 aa10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 ZHX1Q9UKY1 873 aaPredicted RBP10.54□□□□□ -0.72
PDGFRA-208ENST00000509490 TRAPPC10P48553 1259 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 FAM177A1Q8N128 213 aaPredicted RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 RBM28Q9NW13 759 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 ADD3Q9UEY8 706 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 DOT1LQ8TEK3 1739 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 CASQ1P31415 396 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 GUCY1A2P33402 732 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 USP5P45974 858 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 DPYDQ12882 1025 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 PARP10Q53GL7 1025 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 RASGRP2Q7LDG7 609 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 RAB11FIP4Q86YS3 637 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 ZNF654Q8IZM8 581 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 MYO1AQ9UBC5 1043 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 POTEB2H3BUK9 544 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 POLR2DO15514 142 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 TUBBP07437 444 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 PRR29P0C7W0 189 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 CALM1P0DP23 149 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 CALM2P0DP24 149 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 CALM3P0DP25 149 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 EIF5P55010 431 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 BRD3Q15059 726 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 PKN1Q16512 942 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 MAGEB6Q8N7X4 407 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 MNS1Q8NEH6 495 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 BRIP1Q9BX63 1249 aa10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 LIMA1Q9UHB6 759 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 TRMT112Q9UI30 125 aaKnown RBP10.53□□□□□ -0.72
PDGFRA-208ENST00000509490 RAB21Q9UL25 225 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms