RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RRP1BQ14684 758 aaKnown RBP13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 ABCB5Q2M3G0 1257 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 SAMD1Q6SPF0 538 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 CCDC84Q86UT8 332 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 MKNK2Q9HBH9 465 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 SWAP70Q9UH65 585 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 MANSC4A6NHS7 340 aaPredicted RBP13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 SMIM22K7EJ46 135 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 GH2P01242 217 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 HSPD1P10809 573 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 SHMT1P34896 483 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 CDK8P49336 464 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 GTF2A2P52657 109 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 PPATQ06203 517 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 RAB3GAP1Q15042 981 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 SBK1Q52WX2 424 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 CASC1Q6TDU7 716 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 METTL16Q86W50 562 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
LIMCH1-210ENST00000509454 RAD50Q92878 1312 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 ATAD5Q96QE3 1844 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 CCL15-CCL14A0A0B4J2E2 113 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 TRIM75PA6NK02 468 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 USP17L5A8MUK1 530 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 IRF6O14896 467 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 ASNSP08243 561 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 PPARAQ07869 468 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 SNAPC2Q13487 334 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 CCL15Q16663 113 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 SHROOM1Q2M3G4 852 aaPredicted RBP13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 C16orf86Q6ZW13 317 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 JMYQ8N9B5 988 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 AS3MTQ9HBK9 375 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 ZBTB21Q9ULJ3 1066 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 MYH8P13535 1937 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 LAMB1P07942 1786 aa13.6□□□□□ -0.23
LIMCH1-210ENST00000509454 PRDM1O75626 825 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 CETPP11597 493 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 CTDSPL2Q05D32 466 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 GABPAQ06546 454 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 PDE4BQ07343 736 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 TATDN1Q6P1N9 297 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 ZNF287Q9HBT7 754 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 TOMM22Q9NS69 142 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 FOXP2O15409 715 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 CDC45O75419 566 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 FGAP02671 866 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 HSPA1AP0DMV8 641 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 HSPA1BP0DMV9 641 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 HAND2P61296 217 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 OTUD7BQ6GQQ9 843 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 GADL1Q6ZQY3 521 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 KIAA1211Q6ZU35 1233 aa13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 ZNF444Q8N0Y2 327 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-210ENST00000509454 THSD7BQ9C0I4 1608 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 AKR1B1P15121 316 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 JAG1P78504 1218 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 SPP2Q13103 211 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 ALX1Q15699 326 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 ZNF280CQ8ND82 737 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 FEZ1Q99689 392 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 IL25Q9H293 177 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 GINM1Q9NU53 330 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 CTNNA3Q9UI47 895 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 TAOK2Q9UL54 1235 aa13.58□□□□□ -0.24
LIMCH1-210ENST00000509454 SGSM2O43147 1006 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 TRPA1O75762 1119 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 DSG3P32926 999 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 INHBEP58166 350 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 ATP2B2Q01814 1243 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 SEPT2Q15019 361 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 RRP12Q5JTH9 1297 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 BRI3BPQ8WY22 251 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 CCDC17Q96LX7 622 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 DSCC1Q9BVC3 393 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 TBC1D2Q9BYX2 928 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 WBP1LQ9NX94 342 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 TSKSQ9UJT2 592 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 AFG3L2Q9Y4W6 797 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 ROBO3Q96MS0 1386 aa13.57□□□□□ -0.24
LIMCH1-210ENST00000509454 CXCL11O14625 94 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 ZNF213O14771 459 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 TM4SF4P48230 202 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 MTMR2Q13614 643 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 ZYXQ15942 572 aaKnown RBP13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 TMEM179Q6ZVK1 233 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 IFNL1Q8IU54 200 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 MS4A4AQ96JQ5 239 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 ESYT1Q9BSJ8 1104 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 RNF186Q9NXI6 227 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 TMOD4Q9NZQ9 345 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 KCNH4Q9UQ05 1017 aa13.56□□□□□ -0.24
LIMCH1-210ENST00000509454 RAD21O60216 631 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 RANBP6O60518 1105 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 TSPY3P0CV98 308 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 TSPY8P0CW00 308 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 RASA1P20936 1047 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 HMGCS2P54868 508 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 ICA1Q05084 483 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms