RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 TAOK2Q9UL54 1235 aa14.09□□□□□ -0.15
HMGCS1-204ENST00000507293 BRCA2P51587 3418 aa14.09□□□□□ -0.15
HMGCS1-204ENST00000507293 HLA-DOAP06340 250 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 MAGEB6Q8N7X4 407 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 PXYLP1Q8TE99 480 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 U2AF1L4Q8WU68 220 aaKnown RBP14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 ANTXR1Q9H6X2 564 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 IL1RAPL2Q9NP60 686 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 TMOD4Q9NZQ9 345 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 ZBTB21Q9ULJ3 1066 aa14.08□□□□□ -0.16
HMGCS1-204ENST00000507293 H0YGN5 161 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 USP5P45974 858 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 BACE1P56817 501 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 IRX3P78415 501 aaPredicted RBP14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 UBE2Q1Q7Z7E8 422 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 MKI67P46013 3256 aaKnown RBP14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 MYH8P13535 1937 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 ALPK3Q96L96 1907 aa14.07□□□□□ -0.16
HMGCS1-204ENST00000507293 FARP2O94887 1054 aaPredicted RBP14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 MAP3K12Q12852 859 aa14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 RHPN1Q8TCX5 695 aa14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 DPF3Q92784 378 aa14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 GINM1Q9NU53 330 aa14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 MORF4L1Q9UBU8 362 aa14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 COLQQ9Y215 455 aaPredicted RBP14.06□□□□□ -0.16
HMGCS1-204ENST00000507293 MYH7P12883 1935 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 C19orf81C9J6K1 198 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 USP17L10C9JJH3 530 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 SGPL1O95470 568 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 HSP90AB4PQ58FF6 505 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 CERS3Q8IU89 383 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 DEFB118Q96PH6 123 aa14.05□□□□□ -0.16
HMGCS1-204ENST00000507293 APBB1O00213 710 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 PEX10O60683 326 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 GH2P01242 217 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 MS4A1P11836 297 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 HOXA7P31268 230 aaPredicted RBP14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 P2RX7Q99572 595 aaKnown RBP14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 HTATIP2Q9BUP3 242 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 PAK6Q9NQU5 681 aaPredicted RBP14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 SERPINB13Q9UIV8 391 aa14.04□□□□□ -0.16
HMGCS1-204ENST00000507293 TFRCP02786 760 aaKnown RBP14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 HMGCRP04035 888 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 FXR1P51114 621 aaKnown RBP eCLIP14.03□□□□□ -0.161e-6■■■■□ 20.2
HMGCS1-204ENST00000507293 HERVK_113P62684 666 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 TATDN1Q6P1N9 297 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 TMED8Q6PL24 325 aaPredicted RBP14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 USP17L2Q6R6M4 530 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 CLASRPQ8N2M8 674 aaKnown RBP14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 FEZ1Q99689 392 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 RIOK1Q9BRS2 568 aaKnown RBP14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.03□□□□□ -0.169e-6■□□□□ 8.2
HMGCS1-204ENST00000507293 EHD4Q9H223 541 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 TXNRD2Q9NNW7 524 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 EMILIN3Q9NT22 766 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 GJD2Q9UKL4 321 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 COG6Q9Y2V7 657 aa14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 BAZ2AQ9UIF9 1905 aaKnown RBP14.03□□□□□ -0.16
HMGCS1-204ENST00000507293 CEP290O15078 2479 aa14.02□□□□□ -0.16
HMGCS1-204ENST00000507293 MAGEB6P1A0A0J9YX57 407 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 TTF1Q15361 905 aaPredicted RBP14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 ZYXQ15942 572 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 CHRDL2Q6WN34 429 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 TTC6Q86TZ1 520 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 SIRT2Q8IXJ6 389 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 RPAP2Q8IXW5 612 aaPredicted RBP14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 GPRC5AQ8NFJ5 357 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 KIF1BPQ96EK5 621 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 DNAJC2Q99543 621 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 CRISPLD2Q9H0B8 497 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 BCL11AQ9H165 835 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 DDX19BQ9UMR2 479 aa14.02□□□□□ -0.17
HMGCS1-204ENST00000507293 FRMPD3Q5JV73 1810 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 HMMRO75330 724 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 IFIT2P09913 472 aaKnown RBP14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 PDE6AP16499 860 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 CYP2B6P20813 491 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 TRIM32Q13049 653 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 RAB3GAP1Q15042 981 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 SLC9C2Q5TAH2 1124 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 TRIB2Q92519 343 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 PAGR1Q9BTK6 254 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 ZBTB40Q9NUA8 1239 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 RBPJLQ9UBG7 517 aa14.01□□□□□ -0.17
HMGCS1-204ENST00000507293 ZNF532Q9HCE3 1301 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 GOLIM4O00461 696 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 POLR3DP05423 398 aaPredicted RBP14□□□□□ -0.17
HMGCS1-204ENST00000507293 CAPN2P17655 700 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 SHMT1P34896 483 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 PLCD1P51178 756 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 ERVK-9P63128 1117 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 ERVK-24P63145 666 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 ABCB5Q2M3G0 1257 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 CERKLQ49MI3 558 aaPredicted RBP14□□□□□ -0.17
HMGCS1-204ENST00000507293 POTEEQ6S8J3 1075 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 DIS3LQ8TF46 1054 aaKnown RBP14□□□□□ -0.17
HMGCS1-204ENST00000507293 GTF3C2Q8WUA4 911 aaPredicted RBP14□□□□□ -0.17
HMGCS1-204ENST00000507293 SOCS4Q8WXH5 440 aa14□□□□□ -0.17
HMGCS1-204ENST00000507293 EDC3Q96F86 508 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms