RNA–Protein interactions for RNA: ENST00000506981.1

LMNA-221, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-221ENST00000506981 PTPN18Q99952 460 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 CFHR5Q9BXR6 569 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 NACAP1Q9BZK3 213 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 ZCCHC17Q9NP64 241 aaKnown RBP23.15■■□□□ 1.3
LMNA-221ENST00000506981 SWAP70Q9UH65 585 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 ZBTB21Q9ULJ3 1066 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 AFG3L2Q9Y4W6 797 aa23.15■■□□□ 1.3
LMNA-221ENST00000506981 PDE4AP27815 886 aa23.14■■□□□ 1.29
LMNA-221ENST00000506981 CERKLQ49MI3 558 aaPredicted RBP23.14■■□□□ 1.29
LMNA-221ENST00000506981 CENPQQ7L2Z9 268 aaPredicted RBP23.14■■□□□ 1.29
LMNA-221ENST00000506981 FASTKD5Q7L8L6 764 aaKnown RBP23.14■■□□□ 1.29
LMNA-221ENST00000506981 CCDC84Q86UT8 332 aaPredicted RBP23.14■■□□□ 1.29
LMNA-221ENST00000506981 CABP5Q9NP86 173 aa23.14■■□□□ 1.29
LMNA-221ENST00000506981 GSG1L2A8MUP6 293 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 ABCB5Q2M3G0 1257 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 COL13A1Q5TAT6 717 aaPredicted RBP23.13■■□□□ 1.29
LMNA-221ENST00000506981 C12orf60Q5U649 245 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 GADL1Q6ZQY3 521 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 FAM43AQ8N2R8 423 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 ZNF280CQ8ND82 737 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 HELLSQ9NRZ9 838 aa23.13■■□□□ 1.29
LMNA-221ENST00000506981 A0A0G2JLL6 359 aaPredicted RBP23.12■■□□□ 1.29
LMNA-221ENST00000506981 PATL2C9JE40 543 aaKnown RBP23.12■■□□□ 1.29
LMNA-221ENST00000506981 BTBD19C9JJ37 291 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 GH2P01242 217 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 SHMT1P34896 483 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 GABPAQ06546 454 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 CTR9Q6PD62 1173 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 PRRT2Q7Z6L0 340 aaPredicted RBP23.12■■□□□ 1.29
LMNA-221ENST00000506981 ANKRD23Q86SG2 305 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 ZFYVE28Q9HCC9 887 aa23.12■■□□□ 1.29
LMNA-221ENST00000506981 CYP2D7A0A087X1C5 515 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 HIP1O00291 1037 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 SPP2Q13103 211 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 CRHR2Q13324 411 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 SBK1Q52WX2 424 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 NOM1Q5C9Z4 860 aaKnown RBP23.11■■□□□ 1.29
LMNA-221ENST00000506981 TTC22Q5TAA0 569 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 DYNLL2Q96FJ2 89 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 CCDC136Q96JN2 1154 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 DIAPH3Q9NSV4 1193 aa23.11■■□□□ 1.29
LMNA-221ENST00000506981 MINDY4BA8MYZ0 360 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 GPR25O00155 361 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 MPHOSPH10O00566 681 aaKnown RBP23.1■■□□□ 1.29
LMNA-221ENST00000506981 EVX2Q03828 476 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 MCMDC2Q4G0Z9 681 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 CCDC129Q6ZRS4 1044 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 NAPBQ9H115 298 aa23.1■■□□□ 1.29
LMNA-221ENST00000506981 A0A0D9SFI3 127 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 SDSP20132 328 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 MFAP1P55081 439 aaKnown RBP23.09■■□□□ 1.29
LMNA-221ENST00000506981 NMIQ13287 307 aaPredicted RBP23.09■■□□□ 1.29
LMNA-221ENST00000506981 RAB3GAP1Q15042 981 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 C16orf86Q6ZW13 317 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 IFNL3Q8IZI9 196 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 SLC44A5Q8NCS7 719 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 FAM227BQ96M60 508 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 WDR18Q9BV38 432 aa23.09■■□□□ 1.29
LMNA-221ENST00000506981 EPB41L4AQ9HCS5 686 aaPredicted RBP23.09■■□□□ 1.29
LMNA-221ENST00000506981 PDHXO00330 501 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 FKTNO75072 461 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 CDK8P49336 464 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 JAG1P78504 1218 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 SHROOM1Q2M3G4 852 aaPredicted RBP23.08■■□□□ 1.29
LMNA-221ENST00000506981 TNS4Q8IZW8 715 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 PROCA1Q8NCQ7 364 aaPredicted RBP23.08■■□□□ 1.29
LMNA-221ENST00000506981 ZNF296Q8WUU4 475 aaPredicted RBP23.08■■□□□ 1.29
LMNA-221ENST00000506981 FEZ1Q99689 392 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 TMOD4Q9NZQ9 345 aa23.08■■□□□ 1.29
LMNA-221ENST00000506981 ROBO3Q96MS0 1386 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 HMGCS2P54868 508 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 MTMR2Q13614 643 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 CCDC17Q96LX7 622 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 PARK7Q99497 189 aaKnown RBP23.07■■□□□ 1.28
LMNA-221ENST00000506981 R3HDMLQ9H3Y0 253 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 ZNF287Q9HBT7 754 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 MYH4Q9Y623 1939 aa23.07■■□□□ 1.28
LMNA-221ENST00000506981 C19orf81C9J6K1 198 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 USP17L10C9JJH3 530 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 SLC3A2P08195 630 aaKnown RBP23.06■■□□□ 1.28
LMNA-221ENST00000506981 MOGSQ13724 837 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 TMEM179Q6ZVK1 233 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 AGTPBP1Q9UPW5 1226 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 GREB1LQ9C091 1923 aaPredicted RBP23.06■■□□□ 1.28
LMNA-221ENST00000506981 CCDC171Q6TFL3 1326 aa23.06■■□□□ 1.28
LMNA-221ENST00000506981 LAMA4Q16363 1823 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 MGAMO43451 1857 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 BACE1P56817 501 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 PABPC4Q13310 644 aaKnown RBP eCLIP23.05■■□□□ 1.287e-18■□□□□ 8.3
LMNA-221ENST00000506981 SH3D19Q5HYK7 790 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 GPAT2Q6NUI2 795 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 MKNK2Q9HBH9 465 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 PNMA3Q9UL41 463 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 SLC45A1Q9Y2W3 748 aa23.05■■□□□ 1.28
LMNA-221ENST00000506981 GSPT1P15170 499 aaKnown RBP23.04■■□□□ 1.28
LMNA-221ENST00000506981 SEPT2Q15019 361 aa23.04■■□□□ 1.28
LMNA-221ENST00000506981 CWC27Q6UX04 472 aaKnown RBP23.04■■□□□ 1.28
LMNA-221ENST00000506981 STK11IPQ8N1F8 1099 aa23.04■■□□□ 1.28
LMNA-221ENST00000506981 SMIM22K7EJ46 135 aa23.03■■□□□ 1.28
LMNA-221ENST00000506981 TLR2O60603 784 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms