RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 KCNH4Q9UQ05 1017 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 PHIPQ8WWQ0 1821 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 TESPA1A2RU30 521 aaPredicted RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 USP17L5A8MUK1 530 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 FGAP02671 866 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 GTF2A2P52657 109 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 CACNB3P54284 484 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 USP14P54578 494 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 MAP2K1Q02750 393 aaPredicted RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 KRT32Q14532 448 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 TSGA10IPQ3SY00 556 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 CERKLQ49MI3 558 aaPredicted RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 FASTKD5Q7L8L6 764 aaKnown RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 GTF3C2Q8WUA4 911 aaPredicted RBP10.05□□□□□ -0.8
PDGFC-205ENST00000506880 SDR42E1Q8WUS8 393 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 STAG1Q8WVM7 1258 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 FAM227BQ96M60 508 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 TCP11L1Q9NUJ3 509 aa10.05□□□□□ -0.8
PDGFC-205ENST00000506880 ZNF213O14771 459 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 HMGB1P09429 215 aaKnown RBP10.04□□□□□ -0.8
PDGFC-205ENST00000506880 CETPP11597 493 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 ZNF157P51786 506 aaPredicted RBP10.04□□□□□ -0.8
PDGFC-205ENST00000506880 PPARAQ07869 468 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 PABPC4Q13310 644 aaKnown RBP eCLIP10.04□□□□□ -0.8
PDGFC-205ENST00000506880 SNAPC2Q13487 334 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 VGLL4Q14135 290 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 SPRYD7Q5W111 196 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 RCSD1Q6JBY9 416 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 JMYQ8N9B5 988 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 PROCA1Q8NCQ7 364 aaPredicted RBP10.04□□□□□ -0.8
PDGFC-205ENST00000506880 LPAR1Q92633 364 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 TTC14Q96N46 770 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 KRT23Q9C075 422 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 KANSL2Q9H9L4 492 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 MKNK2Q9HBH9 465 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 EPB41L4AQ9HCS5 686 aaPredicted RBP10.04□□□□□ -0.8
PDGFC-205ENST00000506880 SAGE1Q9NXZ1 904 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 WDR19Q8NEZ3 1342 aa10.04□□□□□ -0.8
PDGFC-205ENST00000506880 ZKSCAN1P17029 563 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-205ENST00000506880 PTPRAP18433 802 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 SHMT1P34896 483 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 TM4SF4P48230 202 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 CDK8P49336 464 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 PLCD1P51178 756 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 TRDNQ13061 729 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 ABCB5Q2M3G0 1257 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 SH3D19Q5HYK7 790 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 AKNAD1Q5T1N1 836 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 MFSD6Q6ZSS7 791 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 ZNF589Q86UQ0 364 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-205ENST00000506880 RASAL3Q86YV0 1011 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 ZFPM1Q8IX07 1006 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 ZNF444Q8N0Y2 327 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-205ENST00000506880 WNK4Q96J92 1243 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 CAPNS2Q96L46 248 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 C12orf42Q96LP6 360 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 ZNF408Q9H9D4 720 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 SNCAIPQ9Y6H5 919 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 LOC285556D6RIA3 1793 aa10.03□□□□□ -0.8
PDGFC-205ENST00000506880 MYH4Q9Y623 1939 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 FAM155AB1AL88 458 aaPredicted RBP10.02□□□□□ -0.81
PDGFC-205ENST00000506880 FOXP2O15409 715 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 PRKAB2O43741 272 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 MCCP23508 829 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 NOVP48745 357 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 IQCA1Q86XH1 822 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 ZNF280CQ8ND82 737 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 NEDD1Q8NHV4 660 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 ESR2Q92731 530 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 MKL1Q969V6 931 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 SEC62Q99442 399 aaKnown RBP10.02□□□□□ -0.81
PDGFC-205ENST00000506880 KIAA1683Q9H0B3 1180 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 DNAJC18Q9H819 358 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 ARHGEF10LQ9HCE6 1279 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 NYAP2Q9P242 653 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 ZBTB21Q9ULJ3 1066 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.02□□□□□ -0.81
PDGFC-205ENST00000506880 AFG3L2Q9Y4W6 797 aa10.02□□□□□ -0.81
PDGFC-205ENST00000506880 WDR33Q9C0J8 1336 aaKnown RBP10.02□□□□□ -0.81
PDGFC-205ENST00000506880 A0A0G2JLL6 359 aaPredicted RBP10.01□□□□□ -0.81
PDGFC-205ENST00000506880 USP17L10C9JJH3 530 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 UBE2Q2LH0YL09 131 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 FDX1P10109 184 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 ANAPC15P60006 121 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 SART3Q15020 963 aaKnown RBP10.01□□□□□ -0.81
PDGFC-205ENST00000506880 SAMD1Q6SPF0 538 aaPredicted RBP10.01□□□□□ -0.81
PDGFC-205ENST00000506880 MIGA2Q7L4E1 593 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 PRRT2Q7Z6L0 340 aaPredicted RBP10.01□□□□□ -0.81
PDGFC-205ENST00000506880 TMTC2Q8N394 836 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 DNAJC5GQ8N7S2 189 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 KCNB2Q92953 911 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 OPTNQ96CV9 577 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 IL17RAQ96F46 866 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 MAF1Q9H063 256 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 SAP30BPQ9UHR5 308 aaKnown RBP10.01□□□□□ -0.81
PDGFC-205ENST00000506880 PNMA3Q9UL41 463 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 PNMA2Q9UL42 364 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 MYPNQ86TC9 1320 aa10.01□□□□□ -0.81
PDGFC-205ENST00000506880 CEP350Q5VT06 3117 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 253.2 ms