RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 GABPAQ06546 454 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 RAB3GAP1Q15042 981 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 MAP3K11Q16584 847 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 ABCB5Q2M3G0 1257 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 DEFB115Q30KQ5 88 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 AKNAD1Q5T1N1 836 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 SAPCD2Q86UD0 394 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 METTL16Q86W50 562 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 SCYL3Q8IZE3 742 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 PIP4P2Q8N4L2 257 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 DNAJC18Q9H819 358 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 ELP3Q9H9T3 547 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 ANAPC4Q9UJX5 808 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 TAOK2Q9UL54 1235 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 BAZ2AQ9UIF9 1905 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 SSC5DA1L4H1 1573 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 UNCXA6NJT0 531 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 PHF20L1A8MW92 1017 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 GH2P01242 217 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 CYP21A2P08686 494 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 HSPA6P17066 643 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 SHMT1P34896 483 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 VGLL4Q14135 290 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 C8orf34Q49A92 452 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 FAM47AQ5JRC9 791 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 CREB3L3Q68CJ9 461 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 RGMBQ6NW40 437 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 TATDN1Q6P1N9 297 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 RALYLQ86SE5 291 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 STAG1Q8WVM7 1258 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 CCDC17Q96LX7 622 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 KRT23Q9C075 422 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 CNNM2Q9H8M5 875 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 UPF2Q9HAU5 1272 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 AS3MTQ9HBK9 375 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 INCENPQ9NQS7 918 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 ZNF112Q9UJU3 913 aa9.72□□□□□ -0.85
LIMCH1-206ENST00000505705 TRPM7Q96QT4 1865 aa9.71□□□□□ -0.85
LIMCH1-206ENST00000505705 USP17L5A8MUK1 530 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 SLC27A2O14975 620 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 ASNSP08243 561 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 PCP11498 1178 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 AKR1B1P15121 316 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 HTRA3P83110 453 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 TFAP4Q01664 338 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 ATP2B2Q01814 1243 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 MKRN3Q13064 507 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 NECTIN1Q15223 517 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 LDLRAD1Q5T700 205 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 TBC1D10CQ8IV04 446 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 NCOA7Q8NI08 942 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 ESR2Q92731 530 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 CCDC102AQ96A19 550 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 OPTNQ96CV9 577 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 OTUD5Q96G74 571 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 CLMNQ96JQ2 1002 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 USP26Q9BXU7 913 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 GINM1Q9NU53 330 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 ZHX2Q9Y6X8 837 aa9.71□□□□□ -0.86
LIMCH1-206ENST00000505705 PAPPA2Q9BXP8 1791 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 E7EWF7 191 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 EPB41L2O43491 1005 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 RAD21O60216 631 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 KDM4AO75164 1064 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 SEC24BO95487 1268 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 PTPRAP18433 802 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 RASA1P20936 1047 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 ECE1P42892 770 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 PPATQ06203 517 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 KRT32Q14532 448 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 RRP1BQ14684 758 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 SEPT2Q15019 361 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 NOL9Q5SY16 702 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 CYP4F22Q6NT55 531 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 TMEM179Q6ZVK1 233 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 ERO1BQ86YB8 467 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 ZBTB21Q9ULJ3 1066 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 SNCAIPQ9Y6H5 919 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 ROBO3Q96MS0 1386 aa9.7□□□□□ -0.86
LIMCH1-206ENST00000505705 ERICH2A1L162 156 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 TRIM75PA6NK02 468 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 B4E1Z4 1266 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 ORC4O43929 436 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 HSPA4P34932 840 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 NEDD4P46934 1319 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 ICA1Q05084 483 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 DDX60LQ5H9U9 1706 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 PPP4R3BQ5MIZ7 849 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 CCDC84Q86UT8 332 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 IQCA1Q86XH1 822 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 HHIPL1Q96JK4 782 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 FEZ1Q99689 392 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 TBC1D2Q9BYX2 928 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 NBPF3Q9H094 633 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 KANSL2Q9H9L4 492 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 ARHGEF10LQ9HCE6 1279 aa9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.69□□□□□ -0.86
LIMCH1-206ENST00000505705 LAMB1P07942 1786 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms