RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 PDHXO00330 501 aa20.28■□□□□ 0.84
SYNE4-207ENST00000505054 SLURP2P0DP57 97 aa20.28■□□□□ 0.84
SYNE4-207ENST00000505054 LRRFIP1Q32MZ4 808 aaKnown RBP20.28■□□□□ 0.84
SYNE4-207ENST00000505054 SKAP1Q86WV1 359 aa20.28■□□□□ 0.84
SYNE4-207ENST00000505054 CRNKL1Q9BZJ0 848 aaKnown RBP20.28■□□□□ 0.84
SYNE4-207ENST00000505054 CPA4Q9UI42 421 aa20.28■□□□□ 0.84
SYNE4-207ENST00000505054 DDX60LQ5H9U9 1706 aaKnown RBP20.27■□□□□ 0.84
SYNE4-207ENST00000505054 M0R2C6 588 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 GSPT1P15170 499 aaKnown RBP20.27■□□□□ 0.84
SYNE4-207ENST00000505054 USP5P45974 858 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 ZMYM1Q5SVZ6 1142 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 TTC22Q5TAA0 569 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 TRIM47Q96LD4 638 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 PPP4R2Q9NY27 417 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 SRRDQ9UH36 339 aa20.27■□□□□ 0.84
SYNE4-207ENST00000505054 PRKAB2O43741 272 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 HOXD10P28358 340 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 CTGFP29279 349 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 PSMC4P43686 418 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 SDR42E1Q8WUS8 393 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 RILPL2Q969X0 211 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 SHISA4Q96DD7 197 aa20.26■□□□□ 0.83
SYNE4-207ENST00000505054 SEC62Q99442 399 aaKnown RBP20.26■□□□□ 0.83
SYNE4-207ENST00000505054 SAP30BPQ9UHR5 308 aaKnown RBP20.26■□□□□ 0.83
SYNE4-207ENST00000505054 COLQQ9Y215 455 aaPredicted RBP20.26■□□□□ 0.83
SYNE4-207ENST00000505054 PHIPQ8WWQ0 1821 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 OSBPP22059 807 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 MAP3K10Q02779 954 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 MOGSQ13724 837 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 STRBPQ96SI9 672 aaKnown RBP20.25■□□□□ 0.83
SYNE4-207ENST00000505054 PARK7Q99497 189 aaKnown RBP20.25■□□□□ 0.83
SYNE4-207ENST00000505054 DHX36Q9H2U1 1008 aaKnown RBP20.25■□□□□ 0.83
SYNE4-207ENST00000505054 DCP1AQ9NPI6 582 aaPredicted RBP20.25■□□□□ 0.83
SYNE4-207ENST00000505054 PALD1Q9ULE6 856 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 SIPA1L1O43166 1804 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 MYPNQ86TC9 1320 aa20.25■□□□□ 0.83
SYNE4-207ENST00000505054 GPAA1O43292 621 aa20.24■□□□□ 0.83
SYNE4-207ENST00000505054 ECM2O94769 699 aaPredicted RBP20.24■□□□□ 0.83
SYNE4-207ENST00000505054 RAET1EQ8TD07 263 aa20.24■□□□□ 0.83
SYNE4-207ENST00000505054 FAM196BA6NMK8 535 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 FMNL1O95466 1100 aaPredicted RBP20.23■□□□□ 0.83
SYNE4-207ENST00000505054 GRK4P32298 578 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 MTFR1Q15390 333 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 TICAM2Q86XR7 235 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 NAV1Q8NEY1 1877 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 NKX2-3Q8TAU0 364 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 SLC4A4Q9Y6R1 1079 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 TRIOBPQ9H2D6 2365 aa20.23■□□□□ 0.83
SYNE4-207ENST00000505054 A0A0D9SFI3 127 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 PHF20L1A8MW92 1017 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 H0YGN5 161 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 CXCL11O14625 94 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 TBC1D12O60347 775 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 SDSP20132 328 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 FAM227BQ96M60 508 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 DNAJC18Q9H819 358 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 ATP8A2Q9NTI2 1148 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 PI4KBQ9UBF8 816 aa20.22■□□□□ 0.83
SYNE4-207ENST00000505054 BCRP11274 1271 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 FCGRTP55899 365 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 EVX2Q03828 476 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 NMIQ13287 307 aaPredicted RBP20.21■□□□□ 0.83
SYNE4-207ENST00000505054 CCDC129Q6ZRS4 1044 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 METTL16Q86W50 562 aaKnown RBP20.21■□□□□ 0.83
SYNE4-207ENST00000505054 SCYL3Q8IZE3 742 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 MCM9Q9NXL9 1143 aa20.21■□□□□ 0.83
SYNE4-207ENST00000505054 GSG1L2A8MUP6 293 aa20.2■□□□□ 0.82
SYNE4-207ENST00000505054 HLA-DOAP06340 250 aa20.2■□□□□ 0.82
SYNE4-207ENST00000505054 GJA8P48165 433 aa20.2■□□□□ 0.82
SYNE4-207ENST00000505054 GPAT2Q6NUI2 795 aa20.2■□□□□ 0.82
SYNE4-207ENST00000505054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.2■□□□□ 0.82
SYNE4-207ENST00000505054 HERC5Q9UII4 1024 aaKnown RBP20.2■□□□□ 0.82
SYNE4-207ENST00000505054 ATAD5Q96QE3 1844 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 A0A0G2JLL6 359 aaPredicted RBP20.19■□□□□ 0.82
SYNE4-207ENST00000505054 GJB1P08034 283 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 CYP2C8P10632 490 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 CYP2D6P10635 497 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 CCL5P13501 91 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 PLCD1P51178 756 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 UBXN2AP68543 259 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 PRKCZQ05513 592 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 PRRT2Q7Z6L0 340 aaPredicted RBP20.19■□□□□ 0.82
SYNE4-207ENST00000505054 SLAIN1Q8ND83 568 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 EHD4Q9H223 541 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 EPB41L4AQ9HCS5 686 aaPredicted RBP20.19■□□□□ 0.82
SYNE4-207ENST00000505054 HELLSQ9NRZ9 838 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 MYH1P12882 1939 aa20.19■□□□□ 0.82
SYNE4-207ENST00000505054 LOC285556D6RIA3 1793 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 FOXP2O15409 715 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 GNAT2P19087 354 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 RRP1BQ14684 758 aaKnown RBP20.18■□□□□ 0.82
SYNE4-207ENST00000505054 FASTKD5Q7L8L6 764 aaKnown RBP20.18■□□□□ 0.82
SYNE4-207ENST00000505054 UBE2Q1Q7Z7E8 422 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 TTC6Q86TZ1 520 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 FOXP4Q8IVH2 680 aaPredicted RBP20.18■□□□□ 0.82
SYNE4-207ENST00000505054 HTATIP2Q9BUP3 242 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 PICK1Q9NRD5 415 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 SLC45A1Q9Y2W3 748 aa20.18■□□□□ 0.82
SYNE4-207ENST00000505054 CYP2D7A0A087X1C5 515 aa20.17■□□□□ 0.82
SYNE4-207ENST00000505054 SMIM22K7EJ46 135 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms