RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TULP1O00294 542 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-204ENST00000501271 PRR29P0C7W0 189 aa11.33□□□□□ -0.6
CLIP1-204ENST00000501271 KCNQ4P56696 695 aa11.33□□□□□ -0.6
CLIP1-204ENST00000501271 UBE4AQ14139 1066 aa11.33□□□□□ -0.6
CLIP1-204ENST00000501271 SF3B3Q15393 1217 aaKnown RBP11.33□□□□□ -0.6
CLIP1-204ENST00000501271 SMIM5Q71RC9 77 aa11.33□□□□□ -0.6
CLIP1-204ENST00000501271 PDCL2Q8N4E4 241 aa11.33□□□□□ -0.6
CLIP1-204ENST00000501271 GNL3LQ9NVN8 582 aaKnown RBP11.33□□□□□ -0.6
CLIP1-204ENST00000501271 BSDC1Q9NW68 430 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-204ENST00000501271 FAM205CA6NFA0 338 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 PRDM1O75626 825 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 KLRK1P26718 216 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 PPP4R3BQ5MIZ7 849 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 CLEC4GQ6UXB4 293 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 CELF1Q92879 486 aaKnown RBP11.32□□□□□ -0.6
CLIP1-204ENST00000501271 FAM84BQ96KN1 310 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-204ENST00000501271 RNF26Q9BY78 433 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-204ENST00000501271 MINPP1Q9UNW1 487 aa11.32□□□□□ -0.6
CLIP1-204ENST00000501271 hCG_1642624A0A1W2PR95 340 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 POLR2DO15514 142 aaKnown RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 ATP2B1P20020 1258 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 UBASH3AP57075 661 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 EVX2Q03828 476 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 POSTNQ15063 836 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 SYCP1Q15431 976 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 PKN1Q16512 942 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 PTPN21Q16825 1174 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 OLFM4Q6UX06 510 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 BICDL1Q6ZP65 573 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 ZSCAN10Q96SZ4 725 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 CABP5Q9NP86 173 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 FANCLQ9NW38 375 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 VPS54Q9P1Q0 977 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 SERTAD1Q9UHV2 236 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 MAN1B1Q9UKM7 699 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 PLEKHA8P1O95397 391 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 SERPINC1P01008 464 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 FUT2Q10981 343 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 CAVIN4Q5BKX8 364 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 EARS2Q5JPH6 523 aaKnown RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 USP49Q70CQ1 688 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 ELOA2Q8IYF1 753 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 GRAMD1CQ8IYS0 662 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 SMARCC1Q92922 1105 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 PPP1R13BQ96KQ4 1090 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 BRIP1Q9BX63 1249 aa11.31□□□□□ -0.6
CLIP1-204ENST00000501271 BCL11BQ9C0K0 894 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
CLIP1-204ENST00000501271 NUTM2BA6NNL0 878 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 NUTM2EB1AL46 878 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 TMEM232C9JQI7 657 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 ZNF827Q17R98 1081 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 CFAP100Q494V2 611 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 NUTM2AQ8IVF1 878 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 PDILTQ8N807 584 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 CSRNP2Q9H175 543 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 INTS13Q9NVM9 706 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 SRPRBQ9Y5M8 271 aaKnown RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 COL24A1Q17RW2 1714 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 KIAA1551Q9HCM1 1747 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 MAST2Q6P0Q8 1798 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 ACTN4O43707 911 aaKnown RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 KCNJ6P48051 423 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 HSP90AA4PQ58FG1 418 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 IFIT1BQ5T764 474 aaKnown RBP11.3□□□□□ -0.6
CLIP1-204ENST00000501271 NT5DC1Q5TFE4 455 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 TBC1D9BQ66K14 1250 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 CTR9Q6PD62 1173 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 BARGINQ6ZT62 677 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 PHF20Q9BVI0 1012 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 CCDC88AQ3V6T2 1871 aa11.3□□□□□ -0.6
CLIP1-204ENST00000501271 PSDA5PKW4 1024 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 WNT7AO00755 349 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 CBFA2T2O43439 604 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 FGRP09769 529 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 SARSP49591 514 aaKnown RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 FMR1Q06787 632 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 GOLGA8FQ08AF8 430 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 GOLGA8DPQ0D2H9 430 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 PPP2R5BQ15173 497 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 VSTM4Q8IW00 320 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 NSUN4Q96CB9 384 aaKnown RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 HOOK1Q9UJC3 728 aaKnown RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 ZNF215Q9UL58 517 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 CEP131Q9UPN4 1083 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 AKAP17AQ02040 695 aaKnown RBP11.29□□□□□ -0.6
CLIP1-204ENST00000501271 TROAPQ12815 778 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 MORC3Q14149 939 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 FBXO33Q7Z6M2 555 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 CATIPQ7Z7H3 387 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 KIF18AQ8NI77 898 aa11.29□□□□□ -0.6
CLIP1-204ENST00000501271 A0A087X0B3 334 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 USP17L12C9JPN9 530 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 USP17L21D6R901 530 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 PRPF3O43395 683 aaKnown RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 NMT2O60551 498 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 KRT2P35908 639 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 MECOMQ03112 1051 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 DHX8Q14562 1220 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms