RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SEMA6BQ9H3T3 888 aa20.44■□□□□ 0.86
VIM-208ENST00000497849 MRS2Q9HD23 443 aa20.44■□□□□ 0.86
VIM-208ENST00000497849 PA2G4Q9UQ80 394 aaKnown RBP20.44■□□□□ 0.86
VIM-208ENST00000497849 APBA2Q99767 749 aa20.43■□□□□ 0.86
VIM-208ENST00000497849 TMOD4Q9NZQ9 345 aa20.43■□□□□ 0.86
VIM-208ENST00000497849 HERC5Q9UII4 1024 aaKnown RBP20.43■□□□□ 0.86
VIM-208ENST00000497849 MAP4K4O95819 1239 aaPredicted RBP20.42■□□□□ 0.86
VIM-208ENST00000497849 ATN1P54259 1190 aaPredicted RBP20.42■□□□□ 0.86
VIM-208ENST00000497849 SHHQ15465 462 aa20.42■□□□□ 0.86
VIM-208ENST00000497849 PLEKHH3Q7Z736 793 aa20.42■□□□□ 0.86
VIM-208ENST00000497849 NSUN4Q96CB9 384 aaKnown RBP20.42■□□□□ 0.86
VIM-208ENST00000497849 FLRT1Q9NZU1 646 aa20.42■□□□□ 0.86
VIM-208ENST00000497849 RLFQ13129 1914 aa20.41■□□□□ 0.86
VIM-208ENST00000497849 SHROOM1Q2M3G4 852 aaPredicted RBP20.41■□□□□ 0.86
VIM-208ENST00000497849 C9orf50Q5SZB4 431 aa20.41■□□□□ 0.86
VIM-208ENST00000497849 MYLIPQ8WY64 445 aa20.41■□□□□ 0.86
VIM-208ENST00000497849 SSH1Q8WYL5 1049 aa20.41■□□□□ 0.86
VIM-208ENST00000497849 TTYH1Q9H313 450 aaPredicted RBP20.41■□□□□ 0.86
VIM-208ENST00000497849 C19orf81C9J6K1 198 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 ASNSP08243 561 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 MAP2K5Q13163 448 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 XAGE2Q96GT9 111 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 PAGR1Q9BTK6 254 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 DNAJC18Q9H819 358 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 COPRSQ9NQ92 184 aa20.4■□□□□ 0.86
VIM-208ENST00000497849 A0A1B0GUL7 405 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 USP17L10C9JJH3 530 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 RTP1P59025 263 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 PI16Q6UXB8 463 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 TBC1D9Q6ZT07 1266 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 CCAR1Q8IX12 1150 aaKnown RBP20.39■□□□□ 0.85
VIM-208ENST00000497849 EDC3Q96F86 508 aaKnown RBP20.39■□□□□ 0.85
VIM-208ENST00000497849 HMG20BQ9P0W2 317 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 PI4KBQ9UBF8 816 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 DDX20Q9UHI6 824 aaKnown RBP20.39■□□□□ 0.85
VIM-208ENST00000497849 CDK5RAP2Q96SN8 1893 aa20.39■□□□□ 0.85
VIM-208ENST00000497849 LDHCP07864 332 aa20.38■□□□□ 0.85
VIM-208ENST00000497849 UBTFL1P0CB47 393 aaPredicted RBP20.38■□□□□ 0.85
VIM-208ENST00000497849 TEX11Q8IYF3 940 aa20.38■□□□□ 0.85
VIM-208ENST00000497849 LPAR1Q92633 364 aa20.38■□□□□ 0.85
VIM-208ENST00000497849 EMILIN3Q9NT22 766 aa20.38■□□□□ 0.85
VIM-208ENST00000497849 PRKAG2Q9UGJ0 569 aa20.38■□□□□ 0.85
VIM-208ENST00000497849 ZNF521Q96K83 1311 aa20.37■□□□□ 0.85
VIM-208ENST00000497849 DNM1LO00429 736 aa20.37■□□□□ 0.85
VIM-208ENST00000497849 CNMDO75829 334 aa20.37■□□□□ 0.85
VIM-208ENST00000497849 GSTO1P78417 241 aa20.37■□□□□ 0.85
VIM-208ENST00000497849 SH3RF3Q8TEJ3 882 aaPredicted RBP20.37■□□□□ 0.85
VIM-208ENST00000497849 GTF3C2Q8WUA4 911 aaPredicted RBP20.37■□□□□ 0.85
VIM-208ENST00000497849 NDUFB9Q9Y6M9 179 aa20.37■□□□□ 0.85
VIM-208ENST00000497849 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.37■□□□□ 0.85
VIM-208ENST00000497849 GDF11O95390 407 aa20.36■□□□□ 0.85
VIM-208ENST00000497849 MVPQ14764 893 aaKnown RBP20.36■□□□□ 0.85
VIM-208ENST00000497849 MFSD14CQ5VZR4 134 aa20.36■□□□□ 0.85
VIM-208ENST00000497849 METTL16Q86W50 562 aaKnown RBP20.36■□□□□ 0.85
VIM-208ENST00000497849 TRPV1Q8NER1 839 aa20.36■□□□□ 0.85
VIM-208ENST00000497849 DHX36Q9H2U1 1008 aaKnown RBP20.36■□□□□ 0.85
VIM-208ENST00000497849 ATP11BQ9Y2G3 1177 aa20.36■□□□□ 0.85
VIM-208ENST00000497849 FOCADQ5VW36 1801 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 MSCO60682 206 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 CNGA1P29973 690 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 SMAD3P84022 425 aaKnown RBP20.35■□□□□ 0.85
VIM-208ENST00000497849 TFCP2Q12800 502 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 SPATA5Q8NB90 893 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 SYMPKQ92797 1274 aaKnown RBP20.35■□□□□ 0.85
VIM-208ENST00000497849 RAI14Q9P0K7 980 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 ZBTB21Q9ULJ3 1066 aa20.35■□□□□ 0.85
VIM-208ENST00000497849 IGHA2P01877 340 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 HOXC6P09630 235 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 FOSL2P15408 326 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 PTPREP23469 700 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 NPLOC4Q8TAT6 608 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 BADQ92934 168 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 CWC22Q9HCG8 908 aaKnown RBP20.34■□□□□ 0.85
VIM-208ENST00000497849 GINM1Q9NU53 330 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 RABGAP1Q9Y3P9 1069 aa20.34■□□□□ 0.85
VIM-208ENST00000497849 SLC15A5A6NIM6 579 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 COL9A1P20849 921 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 CYP2C19P33261 490 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 GJC2Q5T442 439 aaPredicted RBP20.33■□□□□ 0.85
VIM-208ENST00000497849 USP17L2Q6R6M4 530 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 SLC39A5Q6ZMH5 540 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 FOXP4Q8IVH2 680 aaPredicted RBP20.33■□□□□ 0.85
VIM-208ENST00000497849 AKAP2Q9Y2D5 859 aa20.33■□□□□ 0.85
VIM-208ENST00000497849 GLRX3O76003 335 aaKnown RBP20.32■□□□□ 0.84
VIM-208ENST00000497849 ATP2B2Q01814 1243 aa20.32■□□□□ 0.84
VIM-208ENST00000497849 MAPKAPK5Q8IW41 473 aa20.32■□□□□ 0.84
VIM-208ENST00000497849 PRDM5Q9NQX1 630 aaPredicted RBP20.32■□□□□ 0.84
VIM-208ENST00000497849 AATFQ9NY61 560 aaKnown RBP eCLIP20.32■□□□□ 0.84
VIM-208ENST00000497849 FLT1P17948 1338 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 CYBAP13498 195 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 ARID4AP29374 1257 aaPredicted RBP20.31■□□□□ 0.84
VIM-208ENST00000497849 CCNA1P78396 465 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 GRB14Q14449 540 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 SNX17Q15036 470 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 WDR78Q5VTH9 848 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 SH3RF1Q7Z6J0 888 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 TGFBRAP1Q8WUH2 860 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 C12orf42Q96LP6 360 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 NEUROD6Q96NK8 337 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 PDLIM7Q9NR12 457 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms