RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 GPAA1O43292 621 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 PLCD1P51178 756 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 CRHR2Q13324 411 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 GIMAP6Q6P9H5 292 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 PRRT2Q7Z6L0 340 aaPredicted RBP19.61■□□□□ 0.73
SF3A1-209ENST00000496189 FAM43AQ8N2R8 423 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 ZNF296Q8WUU4 475 aaPredicted RBP19.61■□□□□ 0.73
SF3A1-209ENST00000496189 OSBPL3Q9H4L5 887 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 DDX60LQ5H9U9 1706 aaKnown RBP19.6■□□□□ 0.73
SF3A1-209ENST00000496189 PDHXO00330 501 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 CHGBP05060 677 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 TDO2P48775 406 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 SPP2Q13103 211 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 PABPC4Q13310 644 aaKnown RBP eCLIP19.6■□□□□ 0.73
SF3A1-209ENST00000496189 ARHGEF6Q15052 776 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 ABCB5Q2M3G0 1257 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 TATDN1Q6P1N9 297 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 PLEKHM2Q8IWE5 1019 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 PARK7Q99497 189 aaKnown RBP19.6■□□□□ 0.73
SF3A1-209ENST00000496189 PPP4R2Q9NY27 417 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 ZBTB21Q9ULJ3 1066 aa19.6■□□□□ 0.73
SF3A1-209ENST00000496189 USP17L12C9JPN9 530 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 USP17L21D6R901 530 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 MPHOSPH10O00566 681 aaKnown RBP19.59■□□□□ 0.73
SF3A1-209ENST00000496189 ZMYM1Q5SVZ6 1142 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 PROCA1Q8NCQ7 364 aaPredicted RBP19.59■□□□□ 0.73
SF3A1-209ENST00000496189 ERO1AQ96HE7 468 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 ZNF287Q9HBT7 754 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 TMOD4Q9NZQ9 345 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 PNMA3Q9UL41 463 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 CASP8AP2Q9UKL3 1982 aa19.59■□□□□ 0.73
SF3A1-209ENST00000496189 M0R2C6 588 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 GH2P01242 217 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 DGKZQ13574 1117 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 KIF22Q14807 665 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 RAB3GAP1Q15042 981 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 CTU1Q7Z7A3 348 aaKnown RBP19.58■□□□□ 0.72
SF3A1-209ENST00000496189 CCDC84Q86UT8 332 aaPredicted RBP19.58■□□□□ 0.72
SF3A1-209ENST00000496189 FEZ1Q99689 392 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 WDR18Q9BV38 432 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 HELLSQ9NRZ9 838 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.58■□□□□ 0.72
SF3A1-209ENST00000496189 SLC45A1Q9Y2W3 748 aa19.58■□□□□ 0.72
SF3A1-209ENST00000496189 C19orf81C9J6K1 198 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 PATL2C9JE40 543 aaKnown RBP19.57■□□□□ 0.72
SF3A1-209ENST00000496189 USP17L10C9JJH3 530 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 HIP1O00291 1037 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 TLR2O60603 784 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 MFAP1P55081 439 aaKnown RBP19.57■□□□□ 0.72
SF3A1-209ENST00000496189 SP3Q02447 781 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 C12orf60Q5U649 245 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 NAPBQ9H115 298 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 AGTPBP1Q9UPW5 1226 aa19.57■□□□□ 0.72
SF3A1-209ENST00000496189 GSG1L2A8MUP6 293 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 SLC3A2P08195 630 aaKnown RBP19.56■□□□□ 0.72
SF3A1-209ENST00000496189 CYP2D6P10635 497 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 SHMT1P34896 483 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 HMGCS2P54868 508 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 GABPAQ06546 454 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 RRP1BQ14684 758 aaKnown RBP19.56■□□□□ 0.72
SF3A1-209ENST00000496189 PKN2Q16513 984 aaKnown RBP19.56■□□□□ 0.72
SF3A1-209ENST00000496189 SBK1Q52WX2 424 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 CTR9Q6PD62 1173 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 SMCR8Q8TEV9 937 aaPredicted RBP19.56■□□□□ 0.72
SF3A1-209ENST00000496189 CCDC17Q96LX7 622 aa19.56■□□□□ 0.72
SF3A1-209ENST00000496189 BAZ2AQ9UIF9 1905 aaKnown RBP19.55■□□□□ 0.72
SF3A1-209ENST00000496189 MINDY4BA8MYZ0 360 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 USP14P54578 494 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 BACE1P56817 501 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 MTMR2Q13614 643 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 SEC62Q99442 399 aaKnown RBP19.55■□□□□ 0.72
SF3A1-209ENST00000496189 R3HDMLQ9H3Y0 253 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 MKNK2Q9HBH9 465 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 DIAPH3Q9NSV4 1193 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 PHIPQ8WWQ0 1821 aa19.55■□□□□ 0.72
SF3A1-209ENST00000496189 OSBPP22059 807 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 PDE4AP27815 886 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 CDK8P49336 464 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 MCMDC2Q4G0Z9 681 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 TMEM179Q6ZVK1 233 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 C16orf86Q6ZW13 317 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 IFNL3Q8IZI9 196 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 DYNLL2Q96FJ2 89 aa19.54■□□□□ 0.72
SF3A1-209ENST00000496189 MYH8P13535 1937 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 CYP2D7A0A087X1C5 515 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 MOGSQ13724 837 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 SH3D19Q5HYK7 790 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 USP17L2Q6R6M4 530 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 MCOLN1Q9GZU1 580 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 SH2D4AQ9H788 454 aa19.53■□□□□ 0.72
SF3A1-209ENST00000496189 IRX3P78415 501 aaPredicted RBP19.52■□□□□ 0.72
SF3A1-209ENST00000496189 PDE4BQ07343 736 aa19.52■□□□□ 0.72
SF3A1-209ENST00000496189 GPAT2Q6NUI2 795 aa19.52■□□□□ 0.72
SF3A1-209ENST00000496189 SLC44A5Q8NCS7 719 aa19.52■□□□□ 0.72
SF3A1-209ENST00000496189 ARHGEF10LQ9HCE6 1279 aa19.52■□□□□ 0.72
SF3A1-209ENST00000496189 PTPRFP10586 1907 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 SDSP20132 328 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 JAG1P78504 1218 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 NMIQ13287 307 aaPredicted RBP19.51■□□□□ 0.71
SF3A1-209ENST00000496189 SEPT2Q15019 361 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms