RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 TRIM37O94972 964 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 SERPINB2P05120 415 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 LDHBP07195 334 aaKnown RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 XRCC6P12956 609 aaKnown RBP eCLIP8.05□□□□□ -1.12
USP39-219ENST00000496047 AKAP17AQ02040 695 aaKnown RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 PDE4BQ07343 736 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 PPARAQ07869 468 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 CHAF1AQ13111 956 aaPredicted RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 RESTQ13127 1097 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 SAFBQ15424 915 aaKnown RBP eCLIP8.05□□□□□ -1.12
USP39-219ENST00000496047 CCDC178Q5BJE1 867 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 RRP12Q5JTH9 1297 aaKnown RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 COL13A1Q5TAT6 717 aaPredicted RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 PRR5LQ6MZQ0 368 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 CCDC73Q6ZRK6 1079 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 CHST3Q7LGC8 479 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 FBXO33Q7Z6M2 555 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 SGMS1Q86VZ5 419 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 TBC1D10CQ8IV04 446 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 TNS4Q8IZW8 715 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 MIGA1Q8NAN2 632 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 TBC1D22AQ8WUA7 517 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 FAM84BQ96KN1 310 aaPredicted RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 NUP62CLQ9H1M0 184 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 ZNF287Q9HBT7 754 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 SLC24A3Q9HC58 644 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 ATP8A2Q9NTI2 1148 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 TMEM63CQ9P1W3 806 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 RBM27Q9P2N5 1060 aaKnown RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 ANAPC4Q9UJX5 808 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 GGA1Q9UJY5 639 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 IQSEC3Q9UPP2 1182 aaPredicted RBP8.05□□□□□ -1.12
USP39-219ENST00000496047 NID2Q14112 1375 aa8.05□□□□□ -1.12
USP39-219ENST00000496047 NEDD4P46934 1319 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 GSG1L2A8MUP6 293 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 MINDY4BA8MYZ0 360 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 CTAGE5O15320 804 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 FOXP2O15409 715 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 KDM4AO75164 1064 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 BBOX1O75936 387 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 CCDC192P0DO97 292 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 GYS1P13807 737 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 IARSP41252 1262 aaKnown RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 CTDSPL2Q05D32 466 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 SSRP1Q08945 709 aaKnown RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 SF3A1Q15459 793 aaKnown RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 MAP3K11Q16584 847 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 RTN1Q16799 776 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 UVSSAQ2YD98 709 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 APOA5Q6Q788 366 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 C15orf52Q6ZUT6 534 aaKnown RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 MICU3Q86XE3 530 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 NLGN1Q8N2Q7 840 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 JMYQ8N9B5 988 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 FBXW7Q969H0 707 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 CRAMP1Q96RY5 1269 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 EPB41L4AQ9HCS5 686 aaPredicted RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 BRMS1Q9HCU9 246 aa8.04□□□□□ -1.12
USP39-219ENST00000496047 RBM28Q9NW13 759 aaKnown RBP8.04□□□□□ -1.12
USP39-219ENST00000496047 ARFGEF1Q9Y6D6 1849 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 SNAP23O00161 211 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 UFL1O94874 794 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 CAVIN2O95810 425 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 OSBPP22059 807 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 ALDH1B1P30837 517 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 PDE6BP35913 854 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 USP5P45974 858 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 FOSBP53539 338 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 ANTXR2P58335 489 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 HIC1Q14526 733 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 STK38Q15208 465 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 ZRSR1Q15695 479 aaKnown RBP8.03□□□□□ -1.12
USP39-219ENST00000496047 TXNRD1Q16881 649 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 PTF1AQ7RTS3 328 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 CATIPQ7Z7H3 387 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 KCNG4Q8TDN1 519 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 LEO1Q8WVC0 666 aaPredicted RBP8.03□□□□□ -1.12
USP39-219ENST00000496047 KCTD12Q96CX2 325 aaKnown RBP8.03□□□□□ -1.12
USP39-219ENST00000496047 ALG1Q9BT22 464 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 TNMDQ9H2S6 317 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 LY9Q9HBG7 655 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 NCOA5Q9HCD5 579 aaKnown RBP8.03□□□□□ -1.12
USP39-219ENST00000496047 TFCP2L1Q9NZI6 479 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 PARP3Q9Y6F1 533 aa8.03□□□□□ -1.12
USP39-219ENST00000496047 PPEF1O14829 653 aaPredicted RBP8.02□□□□□ -1.13
USP39-219ENST00000496047 PLSCR1O15162 318 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 KINO60870 393 aaKnown RBP8.02□□□□□ -1.13
USP39-219ENST00000496047 GADD45BO75293 160 aaPredicted RBP8.02□□□□□ -1.13
USP39-219ENST00000496047 DDAH1O94760 285 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 DEXIO95424 95 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 YEATS4O95619 227 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 PSEN2P49810 448 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 MECOMQ03112 1051 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 CRY2Q49AN0 593 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 IFIT1BQ5T764 474 aaKnown RBP8.02□□□□□ -1.13
USP39-219ENST00000496047 DMRTA1Q5VZB9 504 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 TYW1BQ6NUM6 668 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 SASS6Q6UVJ0 657 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 CYB5R4Q7L1T6 521 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 TTC6Q86TZ1 520 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms