RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CAP2P40123 477 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 SLBPQ14493 270 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS50-219ENST00000495039 INPP5AQ14642 412 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 LCNL1Q6ZST4 164 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 NSUN3Q9H649 340 aaKnown RBP7.98□□□□□ -1.13
VPS50-219ENST00000495039 FBRSQ9HAH7 460 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 ST14Q9Y5Y6 855 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 CAPN6Q9Y6Q1 641 aa7.98□□□□□ -1.13
VPS50-219ENST00000495039 KRTAP9-7A8MTY7 169 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 CELA3AP09093 270 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 C1QTNF9P0C862 333 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 ZSCAN22P10073 491 aaPredicted RBP7.97□□□□□ -1.13
VPS50-219ENST00000495039 PLPPR2Q96GM1 343 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 ALPK1Q96QP1 1244 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 DIRC2Q96SL1 478 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 OSBPL7Q9BZF2 842 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 WNT10AQ9GZT5 417 aa7.97□□□□□ -1.13
VPS50-219ENST00000495039 ETF1P62495 437 aaKnown RBP7.96□□□□□ -1.14
VPS50-219ENST00000495039 LETMD1Q6P1Q0 360 aa7.96□□□□□ -1.14
VPS50-219ENST00000495039 COX4I2Q96KJ9 171 aa7.96□□□□□ -1.14
VPS50-219ENST00000495039 CNTNAP4Q9C0A0 1308 aa7.96□□□□□ -1.14
VPS50-219ENST00000495039 KRT1P04264 644 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 RAC2P15153 192 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 CYP7A1P22680 504 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 MAPK8P45983 427 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 NKG7Q16617 165 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 ALG1LQ6GMV1 187 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 HID1Q8IV36 788 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 GNEQ9Y223 722 aaKnown RBP7.95□□□□□ -1.14
VPS50-219ENST00000495039 SNCAIPQ9Y6H5 919 aa7.95□□□□□ -1.14
VPS50-219ENST00000495039 CBX7O95931 251 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 KIR3DL1P43629 444 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 LILRA6Q6PI73 481 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 UBE2FQ969M7 185 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 EPB41L4BQ9H329 900 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 SLAMF8Q9P0V8 285 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 SPG7Q9UQ90 795 aa7.94□□□□□ -1.14
VPS50-219ENST00000495039 TMEM253P0C7T8 217 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 PTPN11Q06124 597 aaPredicted RBP7.93□□□□□ -1.14
VPS50-219ENST00000495039 FMR1Q06787 632 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS50-219ENST00000495039 WIPI1Q5MNZ9 446 aaPredicted RBP7.93□□□□□ -1.14
VPS50-219ENST00000495039 C14orf37Q86TY3 774 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 ABHD4Q8TB40 342 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 GAL3ST3Q96A11 431 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 DCP1AQ9NPI6 582 aaPredicted RBP7.93□□□□□ -1.14
VPS50-219ENST00000495039 ZSWIM5Q9P217 1185 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 FAM8A1Q9UBU6 413 aa7.93□□□□□ -1.14
VPS50-219ENST00000495039 CST3P01034 146 aaPredicted RBP7.92□□□□□ -1.14
VPS50-219ENST00000495039 ATP2B2Q01814 1243 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 PRAMEF13Q5VWM6 474 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 TTC6Q86TZ1 520 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 RIN3Q8TB24 985 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 KRTAP4-11Q9BYQ6 195 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 C12orf49Q9H741 205 aa7.92□□□□□ -1.14
VPS50-219ENST00000495039 NPIPB6E9PJ23 425 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 USP17L7P0C7H9 530 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.91□□□□□ -1.14
VPS50-219ENST00000495039 SV2BQ7L1I2 683 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 TMPRSS7Q7RTY8 843 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 ZSCAN29Q8IWY8 852 aaPredicted RBP7.91□□□□□ -1.14
VPS50-219ENST00000495039 SETDB2Q96T68 719 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 CD320Q9NPF0 282 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 RAPGEFL1Q9UHV5 662 aa7.91□□□□□ -1.14
VPS50-219ENST00000495039 MED14OSP0DP75 135 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 GRK4P32298 578 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 TNK2Q07912 1038 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 KCNA10Q16322 511 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 AMIGO3Q86WK7 504 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 XAGE3Q8WTP9 111 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 TMEM59LQ9UK28 342 aa7.9□□□□□ -1.14
VPS50-219ENST00000495039 DNAJC25-GNG10A0A024R161 153 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 TCAF2A6NFQ2 919 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 CIAPIN1Q6FI81 312 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 TTBK2Q6IQ55 1244 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 ATG14Q6ZNE5 492 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 TTLL10Q6ZVT0 673 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 PIWIL2Q8TC59 973 aaKnown RBP7.89□□□□□ -1.15
VPS50-219ENST00000495039 MYLIPQ8WY64 445 aa7.89□□□□□ -1.15
VPS50-219ENST00000495039 TTF2Q9UNY4 1162 aaKnown RBP7.89□□□□□ -1.15
VPS50-219ENST00000495039 NCANO14594 1321 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 GLDCP23378 1020 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 CDK8P49336 464 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 RALGPS1Q5JS13 557 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 SLC26A8Q96RN1 970 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 ARID3AQ99856 593 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 TACC3Q9Y6A5 838 aa7.88□□□□□ -1.15
VPS50-219ENST00000495039 BRD1O95696 1058 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 HPXP02790 462 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 ESR1P03372 595 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 LMNB1P20700 586 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 HK2P52789 917 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 CDH24Q86UP0 819 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 WWC3Q9ULE0 1092 aa7.87□□□□□ -1.15
VPS50-219ENST00000495039 B8ZZF3 427 aa7.86□□□□□ -1.15
VPS50-219ENST00000495039 PRRG2O14669 202 aa7.86□□□□□ -1.15
VPS50-219ENST00000495039 ETV3P41162 512 aa7.86□□□□□ -1.15
VPS50-219ENST00000495039 RPS26P62854 115 aaKnown RBP7.86□□□□□ -1.15
VPS50-219ENST00000495039 MRPL41Q8IXM3 137 aaKnown RBP7.86□□□□□ -1.15
VPS50-219ENST00000495039 ASB16Q96NS5 453 aa7.86□□□□□ -1.15
VPS50-219ENST00000495039 KCNK12Q9HB15 430 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms