RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CEP85Q6P2H3 762 aa26.98■■□□□ 1.91
HDDC3-203ENST00000494993 GINM1Q9NU53 330 aa26.98■■□□□ 1.91
HDDC3-203ENST00000494993 FARP2O94887 1054 aaPredicted RBP26.97■■□□□ 1.91
HDDC3-203ENST00000494993 TMOD4Q9NZQ9 345 aa26.97■■□□□ 1.91
HDDC3-203ENST00000494993 SAP30BPQ9UHR5 308 aaKnown RBP26.97■■□□□ 1.91
HDDC3-203ENST00000494993 IDH1O75874 414 aaKnown RBP26.96■■□□□ 1.91
HDDC3-203ENST00000494993 GDF11O95390 407 aa26.96■■□□□ 1.91
HDDC3-203ENST00000494993 HLA-DOAP06340 250 aa26.96■■□□□ 1.91
HDDC3-203ENST00000494993 SHROOM1Q2M3G4 852 aaPredicted RBP26.96■■□□□ 1.91
HDDC3-203ENST00000494993 ALPK3Q96L96 1907 aa26.96■■□□□ 1.91
HDDC3-203ENST00000494993 C19orf81C9J6K1 198 aa26.95■■□□□ 1.9
HDDC3-203ENST00000494993 CAPN2P17655 700 aa26.95■■□□□ 1.9
HDDC3-203ENST00000494993 IRX3P78415 501 aaPredicted RBP26.95■■□□□ 1.9
HDDC3-203ENST00000494993 PAK6Q9NQU5 681 aaPredicted RBP26.95■■□□□ 1.9
HDDC3-203ENST00000494993 MORF4L1Q9UBU8 362 aa26.95■■□□□ 1.9
HDDC3-203ENST00000494993 ZBTB21Q9ULJ3 1066 aa26.95■■□□□ 1.9
HDDC3-203ENST00000494993 USP17L10C9JJH3 530 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 HOXA7P31268 230 aaPredicted RBP26.94■■□□□ 1.9
HDDC3-203ENST00000494993 CERS3Q8IU89 383 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 ERC1Q8IUD2 1116 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 DEFB118Q96PH6 123 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 EXOC6BQ9Y2D4 811 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 NDUFB9Q9Y6M9 179 aa26.94■■□□□ 1.9
HDDC3-203ENST00000494993 NAV1Q8NEY1 1877 aa26.93■■□□□ 1.9
HDDC3-203ENST00000494993 DDX60LQ5H9U9 1706 aaKnown RBP26.93■■□□□ 1.9
HDDC3-203ENST00000494993 MAGEB6Q8N7X4 407 aa26.93■■□□□ 1.9
HDDC3-203ENST00000494993 MIGA1Q8NAN2 632 aa26.93■■□□□ 1.9
HDDC3-203ENST00000494993 GJD2Q9UKL4 321 aa26.93■■□□□ 1.9
HDDC3-203ENST00000494993 ZBED9Q6R2W3 1325 aa26.92■■□□□ 1.9
HDDC3-203ENST00000494993 TFRCP02786 760 aaKnown RBP26.92■■□□□ 1.9
HDDC3-203ENST00000494993 CHRDL2Q6WN34 429 aa26.92■■□□□ 1.9
HDDC3-203ENST00000494993 AACSQ86V21 672 aa26.92■■□□□ 1.9
HDDC3-203ENST00000494993 PANK1Q8TE04 598 aa26.92■■□□□ 1.9
HDDC3-203ENST00000494993 ANTXR1Q9H6X2 564 aa26.92■■□□□ 1.9
HDDC3-203ENST00000494993 HMGCRP04035 888 aa26.91■■□□□ 1.9
HDDC3-203ENST00000494993 USP5P45974 858 aa26.91■■□□□ 1.9
HDDC3-203ENST00000494993 P2RX7Q99572 595 aaKnown RBP26.91■■□□□ 1.9
HDDC3-203ENST00000494993 CRISPLD2Q9H0B8 497 aa26.91■■□□□ 1.9
HDDC3-203ENST00000494993 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.91■■□□□ 1.9
HDDC3-203ENST00000494993 HERVK_113P62684 666 aa26.9■■□□□ 1.9
HDDC3-203ENST00000494993 MAP3K12Q12852 859 aa26.9■■□□□ 1.9
HDDC3-203ENST00000494993 TMED8Q6PL24 325 aaPredicted RBP26.9■■□□□ 1.9
HDDC3-203ENST00000494993 NR2E3Q9Y5X4 410 aa26.9■■□□□ 1.9
HDDC3-203ENST00000494993 DIEXFQ68CQ4 756 aaKnown RBP26.89■■□□□ 1.9
HDDC3-203ENST00000494993 TXNRD2Q9NNW7 524 aa26.89■■□□□ 1.9
HDDC3-203ENST00000494993 GH2P01242 217 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 HSP90AB4PQ58FF6 505 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 TATDN1Q6P1N9 297 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 GPRC5AQ8NFJ5 357 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 EHD4Q9H223 541 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 SERPINB13Q9UIV8 391 aa26.88■■□□□ 1.89
HDDC3-203ENST00000494993 MYH8P13535 1937 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 PEX10O60683 326 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 USP17L2Q6R6M4 530 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 RHPN1Q8TCX5 695 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 IL1RAPL2Q9NP60 686 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 EMILIN3Q9NT22 766 aa26.87■■□□□ 1.89
HDDC3-203ENST00000494993 TRIM32Q13049 653 aa26.86■■□□□ 1.89
HDDC3-203ENST00000494993 GTF3C2Q8WUA4 911 aaPredicted RBP26.86■■□□□ 1.89
HDDC3-203ENST00000494993 RBM27Q9P2N5 1060 aaKnown RBP26.86■■□□□ 1.89
HDDC3-203ENST00000494993 RBPJLQ9UBG7 517 aa26.86■■□□□ 1.89
HDDC3-203ENST00000494993 RPTORQ8N122 1335 aa26.86■■□□□ 1.89
HDDC3-203ENST00000494993 RANBP2P49792 3224 aaKnown RBP26.86■■□□□ 1.89
HDDC3-203ENST00000494993 TTC6Q86TZ1 520 aa26.85■■□□□ 1.89
HDDC3-203ENST00000494993 TRIB2Q92519 343 aa26.85■■□□□ 1.89
HDDC3-203ENST00000494993 C12orf42Q96LP6 360 aa26.85■■□□□ 1.89
HDDC3-203ENST00000494993 RIOK1Q9BRS2 568 aaKnown RBP26.85■■□□□ 1.89
HDDC3-203ENST00000494993 HMX1Q9NP08 348 aaPredicted RBP26.85■■□□□ 1.89
HDDC3-203ENST00000494993 MS4A1P11836 297 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 CYP2B6P20813 491 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 ERVK-9P63128 1117 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 ERVK-24P63145 666 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 TTF1Q15361 905 aaPredicted RBP26.84■■□□□ 1.89
HDDC3-203ENST00000494993 SOCS4Q8WXH5 440 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 PAWRQ96IZ0 340 aaKnown RBP26.84■■□□□ 1.89
HDDC3-203ENST00000494993 NUDT12Q9BQG2 462 aa26.84■■□□□ 1.89
HDDC3-203ENST00000494993 EVI5O60447 810 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 MAPK4P31152 587 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 Q3C1V9 767 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 CERKLQ49MI3 558 aaPredicted RBP26.83■■□□□ 1.89
HDDC3-203ENST00000494993 ANKLE1Q8NAG6 615 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 DIS3LQ8TF46 1054 aaKnown RBP26.83■■□□□ 1.89
HDDC3-203ENST00000494993 FEZ1Q99689 392 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 PAGR1Q9BTK6 254 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 PRO3102Q9H379 93 aa26.83■■□□□ 1.89
HDDC3-203ENST00000494993 MYH7P12883 1935 aa26.82■■□□□ 1.88
HDDC3-203ENST00000494993 XRCC5P13010 732 aaKnown RBP26.82■■□□□ 1.88
HDDC3-203ENST00000494993 ZYXQ15942 572 aaKnown RBP26.82■■□□□ 1.88
HDDC3-203ENST00000494993 NECAB2Q7Z6G3 386 aa26.82■■□□□ 1.88
HDDC3-203ENST00000494993 CLASRPQ8N2M8 674 aaKnown RBP26.82■■□□□ 1.88
HDDC3-203ENST00000494993 MAGEB6P1A0A0J9YX57 407 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 PLCD1P51178 756 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 PDE3AQ14432 1141 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 RAB3GAP1Q15042 981 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 ABCB5Q2M3G0 1257 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 POTEEQ6S8J3 1075 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 KIF1BPQ96EK5 621 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 PORCNQ9H237 461 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 FRMPD3Q5JV73 1810 aa26.81■■□□□ 1.88
HDDC3-203ENST00000494993 BAZ2AQ9UIF9 1905 aaKnown RBP26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms