RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 MECOMQ03112 1051 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 CEP135Q66GS9 1140 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 IQCA1Q86XH1 822 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 PDILTQ8N807 584 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 NSUN4Q96CB9 384 aaKnown RBP12.87□□□□□ -0.35
CHMP3-209ENST00000494623 BRIP1Q9BX63 1249 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 BCL11BQ9C0K0 894 aaPredicted RBP12.87□□□□□ -0.35
CHMP3-209ENST00000494623 OSBPL5Q9H0X9 879 aaPredicted RBP12.87□□□□□ -0.35
CHMP3-209ENST00000494623 TIAM2Q8IVF5 1701 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 PLEKHA8P1O95397 391 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 SERPINC1P01008 464 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 GLIPR1L2Q4G1C9 344 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 RNF26Q9BY78 433 aaPredicted RBP12.87□□□□□ -0.35
CHMP3-209ENST00000494623 HSD3B7Q9H2F3 369 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 SERTAD1Q9UHV2 236 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 FAM205CA6NFA0 338 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 ZPR1O75312 459 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 XBP1P17861 261 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 RCAN1P53805 252 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 MYL5Q02045 173 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 PTPN14Q15678 1187 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 PKN1Q16512 942 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 SHISA4Q96DD7 197 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 NGLY1Q96IV0 654 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 C8orf37Q96NL8 207 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 BCORQ6W2J9 1755 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 ECM29Q5VYK3 1845 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 NRAPQ86VF7 1730 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 GNPATO15228 680 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 UBASH3AP57075 661 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 MDM2Q00987 491 aaPredicted RBP12.86□□□□□ -0.35
CHMP3-209ENST00000494623 SLC4A8Q2Y0W8 1093 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 FAM47AQ5JRC9 791 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 ARMCX5Q6P1M9 558 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 USP49Q70CQ1 688 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 DPF2Q92785 391 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 NYXQ9GZU5 481 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 FANCLQ9NW38 375 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 NARFQ9UHQ1 456 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 HOOK1Q9UJC3 728 aaKnown RBP12.86□□□□□ -0.35
CHMP3-209ENST00000494623 PAXBP1Q9Y5B6 917 aa12.86□□□□□ -0.35
CHMP3-209ENST00000494623 RREB1Q92766 1687 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 NPHP1O15259 732 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 NMT2O60551 498 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 BMP6P22004 513 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PRDX5P30044 214 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PDE4BQ07343 736 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PPP2R5BQ15173 497 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PTPN21Q16825 1174 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 HSP90AA4PQ58FG1 418 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 EARS2Q5JPH6 523 aaKnown RBP12.85□□□□□ -0.35
CHMP3-209ENST00000494623 FAM182BQ5T319 152 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 GRAMD1CQ8IYS0 662 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 CCAR2Q8N163 923 aaKnown RBP12.85□□□□□ -0.35
CHMP3-209ENST00000494623 CSRNP2Q9H175 543 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 CEP131Q9UPN4 1083 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PRR29P0C7W0 189 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 SFPQP23246 707 aaKnown RBP eCLIP12.85□□□□□ -0.35
CHMP3-209ENST00000494623 POSTNQ15063 836 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 TPTE2Q6XPS3 522 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 TXNRD3Q86VQ6 643 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 CCDC112Q8NEF3 446 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 SRPRBQ9Y5M8 271 aaKnown RBP12.85□□□□□ -0.35
CHMP3-209ENST00000494623 CNTNAP4Q9C0A0 1308 aa12.85□□□□□ -0.35
CHMP3-209ENST00000494623 PRPF3O43395 683 aaKnown RBP12.84□□□□□ -0.35
CHMP3-209ENST00000494623 RPS6KA4O75676 772 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 CYP2D6P10635 497 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 KRT2P35908 639 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 FUT2Q10981 343 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 TROAPQ12815 778 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 CFAP100Q494V2 611 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 ANKRD2Q9GZV1 360 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 MAN1B1Q9UKM7 699 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 CICQ96RK0 1608 aaPredicted RBP12.84□□□□□ -0.35
CHMP3-209ENST00000494623 SEMA3EO15041 775 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 CCDC150Q8NCX0 1101 aa12.84□□□□□ -0.35
CHMP3-209ENST00000494623 CRNKL1Q9BZJ0 848 aaKnown RBP12.84□□□□□ -0.35
CHMP3-209ENST00000494623 DCP1AQ9NPI6 582 aaPredicted RBP12.84□□□□□ -0.35
CHMP3-209ENST00000494623 TRIM75PA6NK02 468 aa12.83□□□□□ -0.35
CHMP3-209ENST00000494623 CTIFO43310 598 aaKnown RBP12.83□□□□□ -0.35
CHMP3-209ENST00000494623 ZNF827Q17R98 1081 aa12.83□□□□□ -0.35
CHMP3-209ENST00000494623 ZNF579Q8NAF0 562 aaKnown RBP12.83□□□□□ -0.35
CHMP3-209ENST00000494623 PHF20Q9BVI0 1012 aa12.83□□□□□ -0.35
CHMP3-209ENST00000494623 RBM28Q9NW13 759 aaKnown RBP12.83□□□□□ -0.35
CHMP3-209ENST00000494623 FGRP09769 529 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 ZNF174Q15697 407 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 NYAP1Q6ZVC0 841 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 SMARCE1Q969G3 411 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 ZMYND15Q9H091 742 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 LAMB2P55268 1798 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 MYH2Q9UKX2 1941 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 CACNA1SQ13698 1873 aa12.83□□□□□ -0.36
CHMP3-209ENST00000494623 CBFA2T2O43439 604 aa12.82□□□□□ -0.36
CHMP3-209ENST00000494623 CALM1P0DP23 149 aa12.82□□□□□ -0.36
CHMP3-209ENST00000494623 CALM2P0DP24 149 aa12.82□□□□□ -0.36
CHMP3-209ENST00000494623 CALM3P0DP25 149 aa12.82□□□□□ -0.36
CHMP3-209ENST00000494623 NOM1Q5C9Z4 860 aaKnown RBP12.82□□□□□ -0.36
CHMP3-209ENST00000494623 AMIGO3Q86WK7 504 aa12.82□□□□□ -0.36
CHMP3-209ENST00000494623 SRBD1Q8N5C6 995 aaKnown RBP12.82□□□□□ -0.36
CHMP3-209ENST00000494623 DHX58Q96C10 678 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms