RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	LRRC24	Q50LG9	513 aa		9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	BPHL	Q86WA6	291 aa	Predicted RBP	9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	LRRN4	Q8WUT4	740 aa		9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	PRMT6	Q96LA8	375 aa	Predicted RBP	9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	PCMTD1	Q96MG8	357 aa	Predicted RBP	9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	SERPINA10	Q9UK55	444 aa		9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	HDAC5	Q9UQL6	1122 aa		9.42	□□□□□ -0.9
RBM39-238	ENST00000493853	FAM205A	Q6ZU69	1335 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	IRS2	Q9Y4H2	1338 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	PDE8B	O95263	885 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	TBC1D8	O95759	1140 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	CT47B1	P0C2W7	299 aa	Predicted RBP	9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	TM4SF4	P48230	202 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	TNNI2	P48788	182 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	INHBE	P58166	350 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	RASA3	Q14644	834 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	RABL6	Q3YEC7	729 aa	Predicted RBP	9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	LDLRAD1	Q5T700	205 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	TBC1D22A	Q8WUA7	517 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	KAZALD1	Q96I82	304 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	USP44	Q9H0E7	712 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	PCDHAC2	Q9Y5I4	1007 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	SCN9A	Q15858	1988 aa		9.41	□□□□□ -0.9
RBM39-238	ENST00000493853	UBTFL1	P0CB47	393 aa	Predicted RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	ARID5B	Q14865	1188 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	NBPF12	Q5TAG4	269 aa	Predicted RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	FBXO33	Q7Z6M2	555 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	CTU1	Q7Z7A3	348 aa	Known RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	DZIP1L	Q8IYY4	767 aa	Known RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	ANKRD44	Q8N8A2	993 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	TDRD3	Q9H7E2	651 aa	Known RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	TMOD2	Q9NZR1	351 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	ZNF70	Q9UC06	446 aa	Predicted RBP	9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	FZD1	Q9UP38	647 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	THSD7B	Q9C0I4	1608 aa		9.4	□□□□□ -0.9
RBM39-238	ENST00000493853	MANSC4	A6NHS7	340 aa	Predicted RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	UNCX	A6NJT0	531 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	TCP10L2	B9ZVM9	353 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	SLC5A1	P13866	664 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	CRK	P46108	304 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	PUM3	Q15397	648 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	PKN2	Q16513	984 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	MAP3K11	Q16584	847 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	OTUD7B	Q6GQQ9	843 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	ANKRD13A	Q8IZ07	590 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	KLHDC4	Q8TBB5	520 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	ZNF296	Q8WUU4	475 aa	Predicted RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	TEKT1	Q969V4	418 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	API5	Q9BZZ5	524 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	GOPC	Q9HD26	462 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	GNL3L	Q9NVN8	582 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	CEP126	Q9P2H0	1117 aa		9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	GMPR2	Q9P2T1	348 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	NOB1	Q9ULX3	412 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-238	ENST00000493853	PAPPA2	Q9BXP8	1791 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	CCER2	I3L3R5	266 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	GPR25	O00155	361 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	EYA2	O00167	538 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	FKTN	O75072	461 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	USP2	O75604	605 aa	Predicted RBP	9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	ZBTB48	P10074	688 aa	Predicted RBP	9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	HDLBP	Q00341	1268 aa	Known RBP	9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	C4orf48	Q5BLP8	95 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	LPIN2	Q92539	896 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	SIL1	Q9H173	461 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	ATP13A2	Q9NQ11	1180 aa		9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	COL1A1	P02452	1464 aa	Predicted RBP	9.38	□□□□□ -0.91
RBM39-238	ENST00000493853	MAST3	O60307	1309 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	RGS19	P49795	217 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	NR6A1	Q15406	480 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	WDR66	Q8TBY9	1149 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	HOOK2	Q96ED9	719 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	WNK4	Q96J92	1243 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	CLMN	Q96JQ2	1002 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	SUGT1	Q9Y2Z0	365 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	CSAD	Q9Y600	493 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	MYH3	P11055	1940 aa		9.37	□□□□□ -0.91
RBM39-238	ENST00000493853	MAGEB6P1	A0A0J9YX57	407 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	IPO8	O15397	1037 aa	Known RBP	9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	CAPN5	O15484	640 aa	Predicted RBP	9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	WDHD1	O75717	1129 aa	Predicted RBP	9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	RFC5	P40937	340 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	NNT	Q13423	1086 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	NOM1	Q5C9Z4	860 aa	Known RBP	9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	TRMT2A	Q8IZ69	625 aa	Known RBP	9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	VGLL2	Q8N8G2	317 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	9.36	□□□□□ -0.91	4e-33	■■□□□ 12
RBM39-238	ENST00000493853	MRI	Q9BWK5	157 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	TMEM39B	Q9GZU3	492 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	ELP3	Q9H9T3	547 aa		9.36	□□□□□ -0.91
RBM39-238	ENST00000493853	AOX1	Q06278	1338 aa		9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	KIF16B	Q96L93	1317 aa		9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	GNAI3	P08754	354 aa		9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	FGFR2	P21802	821 aa		9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	IL15	P40933	162 aa	Predicted RBP	9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	RFX5	P48382	616 aa	Predicted RBP	9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	RARS	P54136	660 aa	Known RBP	9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	CACNB3	P54284	484 aa		9.35	□□□□□ -0.91
RBM39-238	ENST00000493853	SOX10	P56693	466 aa		9.35	□□□□□ -0.91

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