RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ZNF530Q6P9A1 599 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-210ENST00000493582 CCNI2Q6ZMN8 369 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-210ENST00000493582 TMTC1Q8IUR5 882 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 FBXL16Q8N461 479 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 TECPR2O15040 1411 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 FGAP02671 866 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 FNTAP49354 379 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 MRPS25P82663 173 aaKnown RBP13.22□□□□□ -0.29
HDAC4-210ENST00000493582 NEXNQ0ZGT2 675 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 UBE3BQ7Z3V4 1068 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 NKX2-3Q8TAU0 364 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 NUP88Q99567 741 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-210ENST00000493582 ABHD10Q9NUJ1 306 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 KCNG1Q9UIX4 513 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 ZNF185O15231 689 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 RNF113AO15541 343 aaKnown RBP13.21□□□□□ -0.29
HDAC4-210ENST00000493582 GPTP24298 496 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 IMMTQ16891 758 aaKnown RBP13.21□□□□□ -0.29
HDAC4-210ENST00000493582 MB21D2Q8IYB1 491 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-210ENST00000493582 OTUD6BQ8N6M0 293 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 GIMAP7Q8NHV1 300 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 MYO1AQ9UBC5 1043 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 SAR1BQ9Y6B6 198 aa13.21□□□□□ -0.29
HDAC4-210ENST00000493582 TULP1O00294 542 aaPredicted RBP13.21□□□□□ -0.3
HDAC4-210ENST00000493582 NDUFAB1O14561 156 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 FOXP2O15409 715 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 MCM3P25205 808 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 AFMP43652 599 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 ATP2B2Q01814 1243 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 SPATA1Q5VX52 437 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 RALYLQ86SE5 291 aaKnown RBP13.21□□□□□ -0.3
HDAC4-210ENST00000493582 ANKRD18AQ8IVF6 992 aa13.21□□□□□ -0.3
HDAC4-210ENST00000493582 RRP36Q96EU6 259 aaKnown RBP13.21□□□□□ -0.3
HDAC4-210ENST00000493582 ZMYM6O95789 1325 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 ERCC5P28715 1186 aaPredicted RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 PIP4K2AP48426 406 aaPredicted RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 PDIA6Q15084 440 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 FKBP15Q5T1M5 1219 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 GNL3LQ9NVN8 582 aaKnown RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 REXO2Q9Y3B8 237 aaKnown RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 PDCLQ13371 301 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 WASHC4Q2M389 1173 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 FILIP1LQ4L180 1135 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 CYP26C1Q6V0L0 522 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 SND1Q7KZF4 910 aaKnown RBP eCLIP13.2□□□□□ -0.32e-7■■■■■ 27.5
HDAC4-210ENST00000493582 C14orf37Q86TY3 774 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 VPS16Q9H269 839 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 SENP2Q9HC62 589 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 DDX21Q9NR30 783 aaKnown RBP eCLIP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 CCDC189A1A4V9 331 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 KRT9P35527 623 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 METAP2P50579 478 aaKnown RBP eCLIP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 MICU3Q86XE3 530 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 NCOA7Q8NI08 942 aa13.2□□□□□ -0.3
HDAC4-210ENST00000493582 ZKSCAN4Q969J2 545 aaPredicted RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 EPN1Q9Y6I3 576 aaPredicted RBP13.2□□□□□ -0.3
HDAC4-210ENST00000493582 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-210ENST00000493582 BTBD18B2RXH4 712 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 PDE2AO00408 941 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-210ENST00000493582 N4BP3O15049 544 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 ZEB2O60315 1214 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 ECM2O94769 699 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-210ENST00000493582 KIAA0754O94854 1291 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 TOB1P50616 345 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-210ENST00000493582 FKBP4Q02790 459 aaKnown RBP eCLIP13.19□□□□□ -0.31e-6■■■■■ 33.9
HDAC4-210ENST00000493582 NBPF14Q5TI25 921 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 COPS6Q7L5N1 327 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 XAGE3Q8WTP9 111 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 ARL8AQ96BM9 186 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 SH3GL2Q99962 352 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 ANKARQ7Z5J8 1434 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 SYNRGQ9UMZ2 1314 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 ATP1A2P50993 1020 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 CAGE1Q8TC20 777 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 HDAC7Q8WUI4 952 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 MYL10Q9BUA6 226 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 CARD10Q9BWT7 1032 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 MRC1P22897 1456 aa13.19□□□□□ -0.3
HDAC4-210ENST00000493582 TARSL2A2RTX5 802 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 ATP5J2-PTCD1G3V325 749 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 PTCD1O75127 700 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 C2orf54Q08AI8 447 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 TRIM29Q14134 588 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 EZH2Q15910 746 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 CDKAL1Q5VV42 579 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 KCTD16Q68DU8 428 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 ABTB2Q8N961 1025 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 TRIML1Q8N9V2 468 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 JAKMIP2Q96AA8 810 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 CCDC51Q96ER9 411 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 CENPHQ9H3R5 247 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 FBXO2Q9UK22 296 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 MEFVO15553 781 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 ACTN4O43707 911 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 NDUFA10O95299 355 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 IFIT1P09914 478 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 FECHP22830 423 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 RPAINQ86UA6 219 aa13.18□□□□□ -0.3
HDAC4-210ENST00000493582 LRRC59Q96AG4 307 aaKnown RBP13.18□□□□□ -0.3
HDAC4-210ENST00000493582 CTAGE1Q96RT6 745 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms